Basic Information
Locus ID:
Lb5G27939
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
DA1-related 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 168442830 | 168455679 | + | Lb5G27939 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 96,288.31 Da | 49.61 | 70.13 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 497 | 549 | 1.1855E-26 | - |
| CDD | cd09396 | LIM_DA1 | 497 | 549 | 1.1855E-26 | - |
| Pfam | PF12315 | Protein DA1 | 646 | 853 | 9.8E-96 | IPR022087 |
| Pfam | PF00412 | LIM domain | 497 | 550 | 5.0E-9 | IPR001781 |
| Pfam | PF00412 | LIM domain | 497 | 550 | 5.0E-9 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 646 | 853 | 9.8E-96 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 489 | 522 | 1.24E-6 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 489 | 522 | 1.24E-6 | - |
| Gene3D | G3DSA:1.10.287.1490 | - | 35 | 232 | 8.4E-7 | - |
| Gene3D | G3DSA:1.10.287.1490 | - | 35 | 232 | 8.4E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 486 | 555 | 3.0E-14 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 486 | 555 | 3.0E-14 | - |
| SMART | SM00726 | uim | 424 | 443 | 12.0 | IPR003903 |
| SMART | SM00726 | uim | 455 | 474 | 1.6 | IPR003903 |
| SMART | SM00132 | lim_4 | 496 | 548 | 1.8E-11 | IPR001781 |
| SMART | SM00726 | uim | 455 | 474 | 1.6 | IPR003903 |
| SMART | SM00132 | lim_4 | 496 | 548 | 1.8E-11 | IPR001781 |
| SMART | SM00726 | uim | 424 | 443 | 12.0 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 455 | 474 | 8.918929 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 495 | 555 | 11.583099 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 455 | 474 | 8.918929 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 495 | 555 | 11.583099 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 497 | 531 | - | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 497 | 531 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 783 | 801 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 783 | 801 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 783 | 804 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 783 | 804 | - | - |
| Coils | Coil | Coil | 197 | 224 | - | - |
| Coils | Coil | Coil | 197 | 224 | - | - |
| Coils | Coil | Coil | 40 | 67 | - | - |
| Coils | Coil | Coil | 40 | 67 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_021758072.1 | protein DA1-related 1-like [Chenopodium quinoa] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A7C9ENY7 | LIM zinc-binding domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology