Basic Information
Locus ID:
Lb5G27883
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the eukaryotic ribosomal protein eS6 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 166301934 | 166303800 | - | Lb5G27883 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.89 | 25,876.02 Da | 38.81 | 76.43 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01092 | Ribosomal protein S6e | 4 | 106 | 2.6E-45 | IPR001377 |
| Pfam | PF01092 | Ribosomal protein S6e | 4 | 106 | 2.6E-45 | IPR001377 |
| Gene3D | G3DSA:1.20.5.2650 | - | 111 | 212 | 1.1E-38 | - |
| Gene3D | G3DSA:1.20.5.2650 | - | 111 | 212 | 1.1E-38 | - |
| SMART | SM01405 | Ribosomal_S6e_2 | 1 | 106 | 9.1E-57 | IPR001377 |
| SMART | SM01405 | Ribosomal_S6e_2 | 1 | 106 | 9.1E-57 | IPR001377 |
| PIRSF | PIRSF002129 | RPS6e | 1 | 226 | 6.5E-104 | IPR014401 |
| PIRSF | PIRSF002129 | RPS6e | 1 | 226 | 6.5E-104 | IPR014401 |
| ProSitePatterns | PS00578 | Ribosomal protein S6e signature. | 30 | 41 | - | IPR018282 |
| ProSitePatterns | PS00578 | Ribosomal protein S6e signature. | 30 | 41 | - | IPR018282 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 215 | - | - |
| Coils | Coil | Coil | 167 | 194 | - | - |
| Coils | Coil | Coil | 167 | 194 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko01521 (EGFR tyrosine kinase inhibitor resistance)
map01521 (EGFR tyrosine kinase inhibitor resistance)
ko03010 (Ribosome)
map03010 (Ribosome)
ko04066 (HIF-1 signaling pathway)
map04066 (HIF-1 signaling pathway)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31700.1 | ribosomal protein S6. Encodes a putative ribosomal protein S6 (rps6a). RPS6A and RPS6B are fully redundant and essential during gametogenesis. | 0 |
| RefSeq | XP_050376546.1 | 40S ribosomal protein S6-1 [Potentilla anserina] | 0 |
| O48549 | Small ribosomal subunit protein eS6z OS=Arabidopsis thaliana OX=3702 GN=RPS6A PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P6PIM4 | 40S ribosomal protein S6 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0242901 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology