Basic Information
Locus ID:
Lb5G27740
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 160825383 | 160827870 | + | Lb5G27740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 63,335.52 Da | 44.01 | 69.26 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 229 | 263 | 5.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 269 | 305 | 1.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 229 | 263 | 5.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 154 | 186 | 1.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 269 | 305 | 1.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 154 | 186 | 1.8E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 144 | 569 | 1.08E-49 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 144 | 569 | 1.08E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 142 | 478 | 1.2E-54 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 142 | 478 | 1.2E-54 | IPR015943 |
| SMART | SM00320 | WD40_4 | 267 | 306 | 1.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 400 | 441 | 7.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 226 | 264 | 1.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 359 | 399 | 9.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 148 | 187 | 3.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 537 | 571 | 480.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 267 | 306 | 1.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 308 | 347 | 0.19 | IPR001680 |
| SMART | SM00320 | WD40_4 | 400 | 441 | 7.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 359 | 399 | 9.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 537 | 571 | 480.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 148 | 187 | 3.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 308 | 347 | 0.19 | IPR001680 |
| SMART | SM00320 | WD40_4 | 226 | 264 | 1.6E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 233 | 265 | 8.755605 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 155 | 190 | 12.024679 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 273 | 311 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 273 | 311 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 233 | 265 | 8.755605 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 273 | 311 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 233 | 273 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 273 | 311 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 155 | 190 | 12.024679 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 233 | 273 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 155 | 196 | 14.819399 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 155 | 196 | 14.819399 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 251 | 265 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 251 | 265 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 293 | 307 | 3.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 174 | 188 | 3.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 251 | 265 | 3.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 174 | 188 | 3.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 251 | 265 | 3.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 293 | 307 | 3.6E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 102 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48870.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_038705608.1 | 2-deoxy-glucose resistant protein 2-like [Tripterygium wilfordii] | 0 |
| Q6LA54 | Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC3H5.08c PE=1 SV=2 | 0 | |
| TrEMBL | A0A2G5DE76 | WD_REPEATS_REGION domain-containing protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02200331v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology