Basic Information
Locus ID:
Lb5G27727
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 160388696 | 160389987 | + | Lb5G27727 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 40,848.42 Da | 70.46 | 62.88 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 230 | 272 | 1.14297E-21 | - |
| CDD | cd16667 | RING-H2_RNF126_like | 230 | 272 | 1.14297E-21 | - |
| Pfam | PF14369 | zinc-ribbon | 24 | 59 | 5.4E-11 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 230 | 272 | 6.6E-13 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 24 | 59 | 5.4E-11 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 230 | 272 | 6.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 230 | 275 | 2.43E-20 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 230 | 275 | 2.43E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 277 | 2.8E-22 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 277 | 2.8E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 231 | 271 | 9.3E-9 | IPR001841 |
| SMART | SM00184 | ring_2 | 231 | 271 | 9.3E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 231 | 272 | 12.666314 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 231 | 272 | 12.666314 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 119 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010667287.1 | E3 ubiquitin-protein ligase RZF1 isoform X3 [Beta vulgaris subsp. vulgaris] | 0 |
| P0CH30 | E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8B2Z5 | RING-type E3 ubiquitin transferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_007800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology