Basic Information
Locus ID:
Lb5G27680
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
protease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 158351433 | 158360574 | + | Lb5G27680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.46 | 92,675.76 Da | 50.40 | 70.28 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02902 | Ulp1 protease family, C-terminal catalytic domain | 144 | 332 | 4.4E-37 | IPR003653 |
| Pfam | PF02902 | Ulp1 protease family, C-terminal catalytic domain | 144 | 332 | 4.4E-37 | IPR003653 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 121 | 365 | 8.44E-52 | IPR038765 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 121 | 365 | 8.44E-52 | IPR038765 |
| Gene3D | G3DSA:1.10.418.20 | - | 122 | 365 | 2.3E-81 | - |
| Gene3D | G3DSA:3.30.310.130 | - | 169 | 300 | 2.3E-81 | - |
| Gene3D | G3DSA:3.30.310.130 | - | 169 | 300 | 2.3E-81 | - |
| Gene3D | G3DSA:1.10.418.20 | - | 122 | 365 | 2.3E-81 | - |
| ProSiteProfiles | PS50600 | Ubiquitin-like protease family profile. | 129 | 323 | 27.598488 | IPR003653 |
| ProSiteProfiles | PS50600 | Ubiquitin-like protease family profile. | 129 | 323 | 27.598488 | IPR003653 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 559 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 730 | 745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 641 | 657 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 617 | 640 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 818 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 713 | 727 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 617 | 640 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 730 | 745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 534 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 534 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 641 | 657 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 559 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 818 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 713 | 727 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09730.2 | Cysteine proteinases superfamily protein. | 0 |
| RefSeq | XP_017606268.1 | PREDICTED: probable ubiquitin-like-specific protease 2B isoform X2 [Gossypium arboreum] | 0 |
| Q8L7S0 | Probable ubiquitin-like-specific protease 2B OS=Arabidopsis thaliana OX=3702 GN=ULP2B PE=1 SV=3 | 0 | |
| TrEMBL | A0A5J5RH21 | ULP_PROTEASE domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_D05G231500v1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10786, jg28527, jg6144 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23371 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023696 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g007670, BVRB_6g143310 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4182, Sbi_jg49615 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5632 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001037 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10589, Sgl15840 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015198, gene:ENSEOMG00000035176 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0010510, CQ.Regalona.r1.1BG0015340 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30041920, pistato.v30102610 |
| Apiaceae | Apium graveolens | 4 | Ag3G00072, Ag4G01897, Ag8G00731, Ag9G00258 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G000660, COCNU_08G001380 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696967, gene-LOC103717376, gene-LOC120112442 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1748.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G21856, Ftri1G13622, Ftri4G17092 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G09730.1, AT4G33620.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006645m.g.v1.0, Thhalv10024447m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g08320.v2.2, Sp7g31340.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g003490.2N, BniB04g030040.2N, BniB05g004480.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1209 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1313 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g01460 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g08070 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8786 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.220, evm.TU.LG08.725 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002155 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27680 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1411, BH01.1234, CH01.1285 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0209180, gene-QOZ80_7BG0584430 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0530050.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_019868, gene-QYE76_055950 |
| Poaceae | Oryza coarctata | 2 | Oco09G004430, Oco10G004340 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g11770.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G340500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0201207, Pt_Chr0601729 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G000830, Chr04G032200, Chr07G031250, Chr12G032350 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G797400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG053490, gene_TRIDC5BG076740 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G358100.2, TraesCS5B02G514400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb367170_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16699 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2414 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1904, evm.TU.LG06.438 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g03640 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_2_RagTag.499, evm.TU.Scaffold_7_RagTag.920 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-19385, nbisL1-mrna-4694, nbisL1-mrna-9417 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-18073, nbisL1-mrna-2054, nbisL1-mrna-4923 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-20545, nbisL1-mrna-3583, nbisL1-mrna-6751 ... |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000002l.707, evm.TU.utg000009l.661 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00003366, Maker00005893, Maker00010679 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13055, nbisL1-mrna-2603 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10167, nbisL1-mrna-16574 |
| Salicaceae | Populus euphratica | 8 | populus_peu14561, populus_peu22723, populus_peu24157 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598835, gene-LOC132627109 |
| Solanaceae | Solanum chilense | 4 | SOLCI000739400, SOLCI000769600, SOLCI004187100 ... |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004737, gene-LOC107008281 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17462, gene_9608 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G3037 |
| Zosteraceae | Zostera marina | 2 | Zosma01g34970.v3.1, Zosma05g27520.v3.1 |