Basic Information
Locus ID:
Lb5G27661
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 157641981 | 157648208 | - | Lb5G27661 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.81 | 101,917.83 Da | 51.51 | 65.72 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 408 | 712 | 1.72164E-131 | - |
| CDD | cd02661 | Peptidase_C19E | 408 | 712 | 1.72164E-131 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 409 | 711 | 9.8E-46 | IPR001394 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 409 | 711 | 9.8E-46 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 408 | 713 | 1.47E-84 | IPR038765 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 408 | 713 | 1.47E-84 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 405 | 724 | 5.9E-92 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 405 | 724 | 5.9E-92 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 409 | 714 | 51.747864 | IPR028889 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 409 | 714 | 51.747864 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 410 | 425 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 410 | 425 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 785 | 815 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 749 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 879 | 918 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 879 | 918 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 785 | 815 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 879 | 909 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 828 | 850 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 749 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 879 | 909 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 828 | 850 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_021743660.1 | ubiquitin carboxyl-terminal hydrolase 16-like [Chenopodium quinoa] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7AG99 | Putative ubiquitin carboxyl-terminal hydrolase 16 isoform X2 OS=Davidia involucrata OX=16924 GN=Din_025223 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology