Basic Information
Locus ID:
Lb5G27625
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 155586405 | 155588660 | + | Lb5G27625 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.75 | 33,187.73 Da | 42.10 | 82.64 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 250 | 285 | 4.4E-4 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 19 | 98 | 4.0E-23 | IPR022052 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 19 | 98 | 4.0E-23 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 191 | 229 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 191 | 229 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 250 | 285 | 4.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 111 | 290 | 9.16E-23 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 111 | 290 | 9.16E-23 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 156 | 296 | 4.7E-47 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 156 | 296 | 4.7E-47 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 155 | 7.2E-33 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 155 | 7.2E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 246 | 286 | 0.0025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 286 | 0.0025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 140 | 185 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 140 | 185 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 189 | 229 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 189 | 229 | 1.8E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 196 | 231 | 10.732868 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 253 | 287 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 196 | 231 | 10.732868 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 253 | 287 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 196 | 231 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 196 | 231 | 12.914561 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 216 | 230 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 216 | 230 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35050.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. The predicted protein has a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_016539964.2 | WD-40 repeat-containing protein MSI2 [Capsicum annuum] | 0 |
| O22469 | WD-40 repeat-containing protein MSI3 OS=Arabidopsis thaliana OX=3702 GN=MSI3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2G2W9K5 | WD-40 repeat-containing protein MSI1 OS=Capsicum baccatum OX=33114 GN=CQW23_20768 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology