Basic Information
Locus ID:
Lb5G27603
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 155102250 | 155104411 | + | Lb5G27603 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.64 | 52,327.26 Da | 69.96 | 84.24 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 24 | 172 | 1.28405E-41 | IPR044744 |
| CDD | cd02123 | PA_C_RZF_like | 24 | 172 | 1.28405E-41 | IPR044744 |
| Pfam | PF02225 | PA domain | 90 | 151 | 3.5E-8 | IPR003137 |
| Pfam | PF02225 | PA domain | 90 | 151 | 3.5E-8 | IPR003137 |
| Pfam | PF17123 | RING-like zinc finger | 243 | 264 | 1.0E-6 | IPR001841 |
| Pfam | PF17123 | RING-like zinc finger | 243 | 264 | 1.0E-6 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 221 | 264 | 3.18E-7 | - |
| SUPERFAMILY | SSF52025 | PA domain | 90 | 151 | 1.28E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 221 | 264 | 3.18E-7 | - |
| SUPERFAMILY | SSF52025 | PA domain | 90 | 151 | 1.28E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 273 | 2.0E-8 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 30 | 160 | 1.1E-24 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 30 | 160 | 1.1E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 273 | 2.0E-8 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 333 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_028805769.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2-like [Prosopis alba] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P4AK13 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Ziziphus jujuba OX=326968 GN=LOC107421419 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology