Basic Information
Locus ID:
Lb5G27581
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 154189522 | 154191065 | + | Lb5G27581 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 38,410.10 Da | 50.32 | 100.06 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 166 | 209 | 9.75358E-22 | - |
| CDD | cd02123 | PA_C_RZF_like | 1 | 110 | 3.89851E-38 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 166 | 209 | 9.75358E-22 | - |
| CDD | cd02123 | PA_C_RZF_like | 1 | 110 | 3.89851E-38 | IPR044744 |
| Pfam | PF17123 | RING-like zinc finger | 167 | 194 | 7.5E-10 | IPR001841 |
| Pfam | PF02225 | PA domain | 28 | 89 | 8.5E-10 | IPR003137 |
| Pfam | PF02225 | PA domain | 28 | 89 | 8.5E-10 | IPR003137 |
| Pfam | PF17123 | RING-like zinc finger | 167 | 194 | 7.5E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 146 | 220 | 8.7E-18 | - |
| SUPERFAMILY | SSF52025 | PA domain | 28 | 76 | 1.7E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 146 | 220 | 8.7E-18 | - |
| SUPERFAMILY | SSF52025 | PA domain | 28 | 76 | 1.7E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 214 | 1.4E-18 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 1 | 100 | 1.6E-24 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 1 | 100 | 1.6E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 214 | 1.4E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 167 | 208 | 2.6E-8 | IPR001841 |
| SMART | SM00184 | ring_2 | 167 | 208 | 2.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 167 | 209 | 11.913911 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 167 | 209 | 11.913911 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_042988905.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 isoform X2 [Carya illinoinensis] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T1Q3L7 | RING-type domain-containing protein OS=Carya illinoinensis OX=32201 GN=CIPAW_07G160600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology