Basic Information
Locus ID:
Lb5G27455
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 147690750 | 147783852 | - | Lb5G27455 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.39 | 326,730.72 Da | 40.75 | 93.08 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 2353 | 2632 | 7.80484E-91 | IPR044726 |
| CDD | cd09272 | RNase_HI_RT_Ty1 | 1323 | 1462 | 2.13315E-69 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 2079 | 2228 | 3.30591E-83 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 2353 | 2632 | 7.80484E-91 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 2655 | 2875 | 2.12413E-119 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 1750 | 2037 | 1.84195E-109 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 2655 | 2875 | 2.12413E-119 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 1750 | 2037 | 1.84195E-109 | IPR044746 |
| CDD | cd09272 | RNase_HI_RT_Ty1 | 1323 | 1462 | 2.13315E-69 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 2079 | 2228 | 3.30591E-83 | - |
| Pfam | PF00005 | ABC transporter | 2094 | 2180 | 5.5E-8 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 2674 | 2822 | 2.6E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1750 | 2016 | 1.3E-23 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 2340 | 2580 | 1.2E-26 | IPR011527 |
| Pfam | PF13976 | GAG-pre-integrase domain | 504 | 572 | 1.0E-7 | IPR025724 |
| Pfam | PF03732 | Retrotransposon gag protein | 107 | 217 | 3.1E-7 | IPR005162 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1521 | 1609 | 5.0E-20 | IPR013103 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1016 | 1238 | 3.1E-58 | IPR013103 |
| Pfam | PF00005 | ABC transporter | 2674 | 2822 | 2.6E-29 | IPR003439 |
| Pfam | PF00665 | Integrase core domain | 588 | 688 | 3.7E-9 | IPR001584 |
| Pfam | PF00005 | ABC transporter | 2094 | 2180 | 5.5E-8 | IPR003439 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1016 | 1238 | 3.1E-58 | IPR013103 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1521 | 1609 | 5.0E-20 | IPR013103 |
| Pfam | PF00665 | Integrase core domain | 588 | 688 | 3.7E-9 | IPR001584 |
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 48 | 91 | 3.4E-8 | IPR029472 |
| Pfam | PF13976 | GAG-pre-integrase domain | 504 | 572 | 1.0E-7 | IPR025724 |
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 48 | 91 | 3.4E-8 | IPR029472 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1750 | 2016 | 1.3E-23 | IPR011527 |
| Pfam | PF03732 | Retrotransposon gag protein | 107 | 217 | 3.1E-7 | IPR005162 |
| Pfam | PF00664 | ABC transporter transmembrane region | 2340 | 2580 | 1.2E-26 | IPR011527 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 585 | 745 | 4.25E-38 | IPR012337 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 1739 | 2037 | 3.66E-28 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2090 | 2250 | 2.07E-39 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 2336 | 2639 | 1.01E-48 | IPR036640 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1016 | 1429 | 6.0E-30 | IPR043502 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2649 | 2884 | 2.03E-64 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 1739 | 2037 | 3.66E-28 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2090 | 2250 | 2.07E-39 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 2336 | 2639 | 1.01E-48 | IPR036640 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1016 | 1429 | 6.0E-30 | IPR043502 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2649 | 2884 | 2.03E-64 | IPR027417 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 585 | 745 | 4.25E-38 | IPR012337 |
| Gene3D | G3DSA:3.40.50.300 | - | 2640 | 2893 | 3.7E-77 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 2072 | 2272 | 2.4E-51 | IPR027417 |
| Gene3D | G3DSA:3.30.420.10 | - | 580 | 760 | 4.5E-37 | IPR036397 |
| Gene3D | G3DSA:3.40.50.300 | - | 2072 | 2272 | 2.4E-51 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 2300 | 2638 | 2.7E-57 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1728 | 2045 | 1.5E-43 | IPR036640 |
| Gene3D | G3DSA:3.30.420.10 | - | 580 | 760 | 4.5E-37 | IPR036397 |
| Gene3D | G3DSA:3.40.50.300 | - | 2640 | 2893 | 3.7E-77 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1728 | 2045 | 1.5E-43 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 2300 | 2638 | 2.7E-57 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1987 | 2228 | 6.1 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1987 | 2228 | 6.1 | IPR003593 |
| SMART | SM00382 | AAA_5 | 2683 | 2868 | 9.0E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 2683 | 2868 | 9.0E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1998 | 2251 | 15.873158 | IPR003439 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 293 | 306 | 9.751616 | IPR001878 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 583 | 751 | 20.459475 | IPR001584 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1750 | 2029 | 31.057468 | IPR011527 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 583 | 751 | 20.459475 | IPR001584 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 2659 | 2891 | 17.947309 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 2340 | 2620 | 34.993366 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1998 | 2251 | 15.873158 | IPR003439 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 293 | 306 | 9.751616 | IPR001878 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 2340 | 2620 | 34.993366 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1750 | 2029 | 31.057468 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 2659 | 2891 | 17.947309 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 2153 | 2167 | - | IPR017871 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 2153 | 2167 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 889 | 915 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 889 | 915 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 289 | - | - |
| Coils | Coil | Coil | 1910 | 1930 | - | - |
| Coils | Coil | Coil | 1910 | 1930 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_010691208.2 | ABC transporter C family member 3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8MKU3 | ABC-type xenobiotic transporter OS=Abrus precatorius OX=3816 GN=LOC113874996 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology