halophFGD

Basic Information

Locus ID: Lb5G27363

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: PAPA-1-like family protein zinc finger (HIT type) family protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr05	142043939	142048005	+	Lb5G27363

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.13	63,283.37 Da	53.02	52.87	-1.13

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF04795	PAPA-1-like conserved region	426	509	2.3E-20	IPR006880
Pfam	PF04438	HIT zinc finger	525	556	6.2E-7	IPR007529
Pfam	PF04795	PAPA-1-like conserved region	426	509	2.3E-20	IPR006880
Pfam	PF04438	HIT zinc finger	525	556	6.2E-7	IPR007529
SMART	SM01406	PAPA_1_2	426	509	1.6E-28	IPR006880
SMART	SM01406	PAPA_1_2	426	509	1.6E-28	IPR006880
MobiDBLite	mobidb-lite	consensus disorder prediction	34	55	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	235	422	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	243	265	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	141	211	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	288	318	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	455	481	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	148	167	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	186	208	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	34	55	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	455	489	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	356	383	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	19	98	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	186	208	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	19	98	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	141	211	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	235	422	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	243	265	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	319	334	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	455	481	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	148	167	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	319	334	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	288	318	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	455	489	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	356	383	-	-
Coils	Coil	Coil	465	485	-	-
Coils	Coil	Coil	465	485	-	-
Coils	Coil	Coil	432	452	-	-
Coils	Coil	Coil	432	452	-	-

Gene Ontology

Cellular Component:

GO:0031011 (Ino80 complex)

KEGG Pathway

KO Term:

K11666 (INO80 complex subunit B)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G56460.1	HIT zinc finger ;PAPA-1-like conserved region.
RefSeq	XP_021768735.1	uncharacterized protein LOC110733032 [Chenopodium quinoa]
TrEMBL	A0A6P4AC14	uncharacterized protein LOC107426162 OS=Ziziphus jujuba OX=326968 GN=LOC107426162 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg28267, jg35110, jg8974
Aizoaceae	Mesembryanthemum crystallinum	2	gene_15910, gene_19262
Amaranthaceae	Atriplex hortensis	2	Ah000102, Ah019086
Amaranthaceae	Beta vulgaris	2	BVRB_3g053990, BVRB_5g121890
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg29431, Sbi_jg3677, Sbi_jg38024, Sbi_jg38026 ... Sbi_jg6167, Sbi_jg6170
Amaranthaceae	Salicornia europaea	3	Seu_jg15677, Seu_jg15679, Seu_jg6301
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00004477, GOSA_00006211, GOSA_00006214
Amaranthaceae	Suaeda glauca	5	Sgl00719, Sgl00838, Sgl05741, Sgl54533, Sgl59874
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000003692, gene:ENSEOMG00000007448 ... gene:ENSEOMG00000021040, gene:ENSEOMG00000022260, gene:ENSEOMG00000029154, gene:ENSEOMG00000043949
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0027040, CQ.Regalona.r1.5BG0028660
Anacardiaceae	Pistacia vera	4	pistato.v30008050, pistato.v30080400, pistato.v30081140 ... pistato.v30233220
Apiaceae	Apium graveolens	3	Ag10G01773, Ag2G02487, Ag9G02330
Arecaceae	Cocos nucifera	3	COCNU_01G001180, COCNU_12G002990, scaffold056537G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103700982, gene-LOC103712647, gene-LOC103720648 ... gene-LOC103723395, gene-LOC120110162
Asparagaceae	Asparagus officinalis	1	AsparagusV1_08.1964.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G30766, Ftri3G24222
Brassicaceae	Arabidopsis thaliana	3	AT1G56460.2, AT2G47350.1, AT3G06660.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10001400m.g.v1.0, Thhalv10020778m.g.v1.0 ... Thhalv10023443m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g06300.v2.2, Sp3g05650.v2.2, Sp4g29290.v2.2
Brassicaceae	Brassica nigra	5	BniB01g000430.2N, BniB07g045040.2N, BniB07g059470.2N ... BniB08g030660.2N, BniS00512g350.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G1053, Ceq06G1108
Casuarinaceae	Casuarina glauca	2	Cgl06G1095, Cgl06G1152
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno05g15080
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g09800, gene.Thate06g04850
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-8267
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.2555, evm.TU.LG04.461, evm.TU.LG11.1203
Plantaginaceae	Plantago ovata	2	Pov_00007171, Pov_00016473
Plumbaginaceae	Limonium bicolor	4	Lb2G10127, Lb2G10129, Lb3G20509, Lb5G27363
Poaceae	Echinochloa crus-galli	6	AH01.329, AH05.3739, BH01.393, BH05.3788, CH01.245 ... CH05.3987
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_3AG0211060, gene-QOZ80_3BG0256290 ... gene-QOZ80_5BG0442250
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0443500.1, HORVU.MOREX.r3.5HG0524280.1
Poaceae	Lolium multiflorum	2	gene-QYE76_001832, gene-QYE76_060903
Poaceae	Oryza coarctata	4	Oco05G026950, Oco06G027920, Oco23G008380, Oco24G007990
Poaceae	Oryza sativa	2	LOC_Os03g59680.1, LOC_Os12g37430.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G037200, gene-BS78_08G104800
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0105705, Pt_Chr0703852, Pt_Chr0703863
Poaceae	Sporobolus alterniflorus	5	Chr01G001950, Chr04G031180, Chr12G033690, Chr19G009300 ... Chr27G007160
Poaceae	Thinopyrum elongatum	2	Tel5E01G174000, Tel5E01G738700
Poaceae	Triticum dicoccoides	2	gene_TRIDC5AG066800, gene_TRIDC5BG071830
Poaceae	Triticum aestivum	6	TraesCS5A02G088100.1, TraesCS5A02G466600.1 ... TraesCS5B02G094100.1, TraesCS5B02G478400.1, TraesCS5D02G100500.1, TraesCS5D02G479500.1
Poaceae	Zea mays	4	Zm00001eb015100_P001, Zm00001eb062140_P001 ... Zm00001eb136960_P002, Zm00001eb212230_P001
Poaceae	Zoysia japonica	3	nbis-gene-15449, nbis-gene-16560, nbis-gene-50038
Poaceae	Zoysia macrostachya	3	Zma_g206, Zma_g2513, Zma_g25186
Portulacaceae	Portulaca oleracea	2	evm.TU.LG02.1255, evm.TU.LG09.715
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g31350
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_17_RagTag.676, evm.TU.Scaffold_6_RagTag.1182 ... evm.TU.Scaffold_6_RagTag.1183, evm.TU.Scaffold_9_RagTag.741
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-16163, nbisL1-mrna-21479, nbisL1-mrna-23359
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-13254, nbisL1-mrna-14181, nbisL1-mrna-20021
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-1017, nbisL1-mrna-18549, nbisL1-mrna-20001
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.632, evm.TU.utg000011l.755 ... evm.TU.utg000013l.364
Rhizophoraceae	Kandelia obovata	3	Maker00004367, Maker00008386, Maker00009750
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10745, nbisL1-mrna-13547, nbisL1-mrna-1615
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-14373, nbisL1-mrna-4070, nbisL1-mrna-5299
Salicaceae	Populus euphratica	6	populus_peu06904, populus_peu13287, populus_peu15609 ... populus_peu20840, populus_peu27356, populus_peu31340
Solanaceae	Lycium barbarum	3	gene-LOC132598446, gene-LOC132605555, gene-LOC132644927
Solanaceae	Solanum chilense	3	SOLCI000869100, SOLCI004901300, SOLCI007179100
Solanaceae	Solanum pennellii	3	gene-LOC107002875, gene-LOC107008116, gene-LOC107021915
Tamaricaceae	Reaumuria soongarica	2	STRG.18394_chr09_-, gene_16390
Tamaricaceae	Tamarix chinensis	3	TC06G1340, TC07G1734, TC07G2830
Zosteraceae	Zostera marina	3	Zosma01g27580.v3.1, Zosma02g03320.v3.1, Zosma02g23890.v3.1