Basic Information
Locus ID:
Lb5G27321
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 139275066 | 139278652 | + | Lb5G27321 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 84,817.99 Da | 43.93 | 73.37 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 525 | 549 | 0.26 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 372 | 407 | 1.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 272 | 304 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 413 | 438 | 0.042 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 272 | 304 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 372 | 407 | 1.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 525 | 549 | 0.26 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 413 | 438 | 0.042 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 266 | 709 | 2.17E-40 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 266 | 709 | 2.17E-40 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 443 | 580 | 5.7E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 319 | 442 | 5.7E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 254 | 318 | 3.4E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 319 | 442 | 5.7E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 443 | 580 | 5.7E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 254 | 318 | 3.4E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 463 | 507 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 266 | 305 | 6.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 463 | 507 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 412 | 439 | 9.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 508 | 549 | 0.25 | IPR001680 |
| SMART | SM00320 | WD40_4 | 266 | 305 | 6.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 370 | 408 | 3.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 412 | 439 | 9.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 370 | 408 | 3.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 508 | 549 | 0.25 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 413 | 438 | 9.104886 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 273 | 314 | 15.053326 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 377 | 409 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 526 | 558 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 273 | 314 | 15.053326 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 273 | 304 | 12.103769 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 377 | 409 | 10.442869 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 377 | 409 | 10.442869 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 377 | 409 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 526 | 558 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 273 | 304 | 12.103769 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 413 | 438 | 9.104886 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 536 | 550 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 536 | 550 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 395 | 409 | 3.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 292 | 306 | 3.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 292 | 306 | 3.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 395 | 409 | 3.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 426 | 440 | 3.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 426 | 440 | 3.4E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 37 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24320.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021846773.1 | WD repeat-containing protein 44-like [Spinacia oleracea] | 0 |
| Q498F0 | WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QXU2 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_136070 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology