Basic Information
Locus ID:
Lb5G27260
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 133700955 | 133703455 | + | Lb5G27260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 42,167.57 Da | 49.96 | 74.41 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 311 | 351 | 2.8E-6 | IPR002893 |
| Pfam | PF01753 | MYND finger | 311 | 351 | 2.8E-6 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 28 | 79 | 1.31E-6 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 307 | 356 | 9.59E-9 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 96 | 211 | 5.62E-11 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 28 | 79 | 1.31E-6 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 96 | 211 | 5.62E-11 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 307 | 356 | 9.59E-9 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 300 | 355 | 2.3E-9 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 82 | 229 | 4.4E-16 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 300 | 355 | 2.3E-9 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 82 | 229 | 4.4E-16 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 309 | 351 | 10.556973 | IPR002893 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 309 | 351 | 10.556973 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_004135325.1 | F-box protein At1g67340 [Cucumis sativus] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A0KTC5 | MYND-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G589890 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology