Basic Information
Locus ID:
Lb5G26915
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 98621839 | 98646741 | - | Lb5G26915 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 81,226.39 Da | 49.36 | 81.50 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 227 | 360 | 1.43435E-63 | - |
| CDD | cd17920 | DEXHc_RecQ | 26 | 226 | 5.57782E-102 | - |
| CDD | cd17920 | DEXHc_RecQ | 26 | 226 | 5.57782E-102 | - |
| CDD | cd18794 | SF2_C_RecQ | 227 | 360 | 1.43435E-63 | - |
| Pfam | PF16124 | RecQ zinc-binding | 363 | 433 | 4.3E-11 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 252 | 349 | 3.4E-16 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 363 | 433 | 4.3E-11 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 41 | 204 | 7.0E-19 | IPR011545 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 41 | 204 | 7.0E-19 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 252 | 349 | 3.4E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 76 | 368 | 1.06E-53 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 76 | 368 | 1.06E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 227 | 450 | 1.7E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 7 | 226 | 2.7E-86 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 227 | 450 | 1.7E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 7 | 226 | 2.7E-86 | IPR027417 |
| SMART | SM00487 | ultradead3 | 33 | 235 | 1.6E-31 | IPR014001 |
| SMART | SM00490 | helicmild6 | 270 | 351 | 8.1E-24 | IPR001650 |
| SMART | SM00490 | helicmild6 | 270 | 351 | 8.1E-24 | IPR001650 |
| SMART | SM00487 | ultradead3 | 33 | 235 | 1.6E-31 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 26 | 461 | 1.8E-143 | IPR004589 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 26 | 461 | 1.8E-143 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 45 | 219 | 24.4231 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 250 | 391 | 18.336548 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 45 | 219 | 24.4231 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 250 | 391 | 18.336548 | IPR001650 |
| Coils | Coil | Coil | 558 | 578 | - | - |
| Coils | Coil | Coil | 558 | 578 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_010656106.1 | PREDICTED: ATP-dependent DNA helicase Q-like 3 isoform X1 [Vitis vinifera] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S0TZP7 | ATP-dependent DNA helicase OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A114669 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology