Basic Information
Locus ID:
Lb5G26649
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 65191292 | 65206668 | + | Lb5G26649 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 261,107.48 Da | 41.26 | 85.54 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 842 | 962 | 4.32475E-5 | - |
| CDD | cd00030 | C2 | 842 | 962 | 4.32475E-5 | - |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 1341 | 1649 | 5.0E-12 | IPR009543 |
| Pfam | PF00168 | C2 domain | 840 | 950 | 5.3E-5 | IPR000008 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 289 | 362 | 2.3E-8 | IPR009291 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 132 | 216 | 7.2E-22 | IPR026960 |
| Pfam | PF00168 | C2 domain | 840 | 950 | 5.3E-5 | IPR000008 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 447 | 587 | 8.1E-10 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 1341 | 1649 | 5.0E-12 | IPR009543 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 132 | 216 | 7.2E-22 | IPR026960 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 289 | 362 | 2.3E-8 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 447 | 587 | 8.1E-10 | IPR009291 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 835 | 947 | 1.44E-5 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 835 | 947 | 1.44E-5 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 825 | 987 | 6.9E-6 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 825 | 987 | 6.9E-6 | IPR035892 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 817 | 960 | 9.171793 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 817 | 960 | 9.171793 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2326 | 2340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2326 | 2340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2309 | 2340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2309 | 2340 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.2 | - | 0 |
| RefSeq | XP_034685721.1 | LOW QUALITY PROTEIN: uncharacterized protein LOC117914486 [Vitis riparia] | 0 |
| TrEMBL | A0A5B6YQW0 | C2 domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_003542 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology