Basic Information
Locus ID:
Lb5G26535
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 35266264 | 35267511 | + | Lb5G26535 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.71 | 23,444.92 Da | 61.36 | 84.69 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 126 | 168 | 9.22009E-16 | - |
| CDD | cd16454 | RING-H2_PA-TM-RING | 126 | 168 | 9.22009E-16 | - |
| Pfam | PF13639 | Ring finger domain | 126 | 168 | 1.5E-11 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 126 | 168 | 1.5E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 122 | 174 | 1.46E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 122 | 174 | 1.46E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 173 | 9.9E-19 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 173 | 9.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 126 | 167 | 3.0E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 126 | 167 | 3.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 126 | 168 | 12.267982 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 126 | 168 | 12.267982 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30370.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_043708214.1 | RING-H2 finger protein ATL56-like [Telopea speciosissima] | 0 |
| Q9M0C3 | RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P5B042 | 43kDa postsynaptic protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_284080 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology