halophFGD

Basic Information

Locus ID: Lb5G26533

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: source UniProtKB

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr05	34976520	34986353	+	Lb5G26533

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.70	165,696.77 Da	50.30	71.96	-0.60

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16454	RING-H2_PA-TM-RING	1386	1428	1.01699E-16	-
CDD	cd16454	RING-H2_PA-TM-RING	1386	1428	1.01699E-16	-
Pfam	PF13639	Ring finger domain	1386	1428	1.9E-10	IPR001841
Pfam	PF02992	Transposase family tnp2	304	466	9.7E-70	IPR004242
Pfam	PF02902	Ulp1 protease family, C-terminal catalytic domain	1099	1189	9.0E-8	IPR003653
Pfam	PF13963	Transposase-associated domain	3	77	1.3E-14	IPR029480
Pfam	PF02992	Transposase family tnp2	304	466	9.7E-70	IPR004242
Pfam	PF02902	Ulp1 protease family, C-terminal catalytic domain	1099	1189	9.0E-8	IPR003653
Pfam	PF13963	Transposase-associated domain	3	77	1.3E-14	IPR029480
Pfam	PF13639	Ring finger domain	1386	1428	1.9E-10	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	1382	1434	5.08E-17	-
SUPERFAMILY	SSF54001	Cysteine proteinases	1021	1192	4.91E-22	IPR038765
SUPERFAMILY	SSF54001	Cysteine proteinases	1021	1192	4.91E-22	IPR038765
SUPERFAMILY	SSF57850	RING/U-box	1382	1434	5.08E-17	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	1350	1433	2.3E-17	IPR013083
Gene3D	G3DSA:3.40.395.10	Adenoviral Proteinase; Chain A	1002	1207	4.6E-17	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	1350	1433	2.3E-17	IPR013083
Gene3D	G3DSA:3.40.395.10	Adenoviral Proteinase; Chain A	1002	1207	4.6E-17	-
SMART	SM00184	ring_2	1386	1427	3.0E-6	IPR001841
SMART	SM00184	ring_2	1386	1427	3.0E-6	IPR001841
ProSiteProfiles	PS50600	Ubiquitin-like protease family profile.	1025	1191	10.547335	IPR003653
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	1386	1428	12.267982	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	1386	1428	12.267982	IPR001841
ProSiteProfiles	PS50600	Ubiquitin-like protease family profile.	1025	1191	10.547335	IPR003653
MobiDBLite	mobidb-lite	consensus disorder prediction	477	548	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	85	117	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	86	117	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1260	1292	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1260	1294	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	477	548	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	85	117	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1260	1294	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	840	864	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	840	864	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	86	117	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1260	1292	-	-
Coils	Coil	Coil	811	831	-	-
Coils	Coil	Coil	811	831	-	-

Gene Ontology

Biological Process:

GO:0006508 (proteolysis)

Molecular Function:

GO:0008234 (cysteine-type peptidase activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G30370.1	RING/U-box superfamily protein.
RefSeq	XP_021722679.1	uncharacterized protein LOC110690158 [Chenopodium quinoa]
Swiss-Prot	Q9M0C3	RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1
TrEMBL	A0A1S2YL77	uncharacterized protein LOC101492240 OS=Cicer arietinum OX=3827 GN=LOC101492240 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	2	Sgl83028, Sgl83243
Asteraceae	Flaveria trinervia	1	Ftri11G21610
Plumbaginaceae	Limonium bicolor	205	Lb0G36902, Lb0G37063, Lb0G37200, Lb0G37615, Lb0G37746 ... Lb1G00016, Lb1G00025, Lb1G00041, Lb1G00216, Lb1G00446, Lb1G00496, Lb1G00537, Lb1G00838, Lb1G00881, Lb1G01217, Lb1G01250, Lb1G01420, Lb1G01727, Lb1G01739, Lb1G01864, Lb1G02109, Lb1G02190, Lb1G02386, Lb1G02665, Lb1G02901, Lb1G04123, Lb1G04369, Lb1G04498, Lb1G04508, Lb1G04544, Lb1G04801, Lb1G04989, Lb1G05062, Lb1G05705, Lb1G06154, Lb1G06343, Lb1G06536, Lb1G07190, Lb1G07606, Lb1G08079, Lb1G08084, Lb2G08488, Lb2G08848, Lb2G09003, Lb2G09148, Lb2G09151, Lb2G09732, Lb2G10130, Lb2G10257, Lb2G10268, Lb2G10796, Lb2G11162, Lb2G11275, Lb2G11363, Lb2G11364, Lb2G11700, Lb2G11973, Lb2G12024, Lb2G12090, Lb2G12144, Lb2G12148, Lb2G12772, Lb2G14019, Lb2G14433, Lb2G14511, Lb2G14738, Lb2G14769, Lb2G14775, Lb2G14777, Lb2G14779, Lb2G14787, Lb2G14822, Lb2G14863, Lb2G15122, Lb3G15887, Lb3G15944, Lb3G16026, Lb3G16136, Lb3G16486, Lb3G16505, Lb3G16933, Lb3G16974, Lb3G18077, Lb3G18799, Lb3G19247, Lb3G19458, Lb3G19924, Lb3G20000, Lb3G20090, Lb3G20112, Lb3G20377, Lb3G21074, Lb3G21407, Lb4G21885, Lb4G22209, Lb4G22210, Lb4G22510, Lb4G23391, Lb4G23834, Lb4G24203, Lb4G24542, Lb4G24623, Lb4G24702, Lb4G25029, Lb4G25228, Lb4G25239, Lb4G25243, Lb4G25342, Lb4G25423, Lb4G25437, Lb4G25535, Lb4G25571, Lb4G26024, Lb4G26130, Lb4G26162, Lb4G26268, Lb4G26311, Lb4G26371, Lb5G26430, Lb5G26481, Lb5G26498, Lb5G26520, Lb5G26533, Lb5G26534, Lb5G26570, Lb5G26588, Lb5G26681, Lb5G26742, Lb5G26986, Lb5G26989, Lb5G27035, Lb5G27103, Lb5G27152, Lb5G27158, Lb5G27187, Lb5G27188, Lb5G27190, Lb5G27320, Lb5G27668, Lb5G28081, Lb5G28149, Lb5G28249, Lb5G28756, Lb5G28862, Lb5G29295, Lb5G29470, Lb5G29520, Lb5G29610, Lb6G29651, Lb6G30138, Lb6G30357, Lb6G30358, Lb6G30382, Lb6G30561, Lb6G30663, Lb6G30781, Lb6G30811, Lb6G30830, Lb6G30840, Lb6G30846, Lb6G30864, Lb6G30937, Lb6G31137, Lb6G31222, Lb6G31418, Lb6G31748, Lb6G31849, Lb6G32045, Lb6G32399, Lb6G32595, Lb7G32703, Lb7G32755, Lb7G32868, Lb7G33086, Lb7G33313, Lb7G33361, Lb7G33383, Lb7G33437, Lb7G33438, Lb7G33475, Lb7G33577, Lb7G33692, Lb7G33720, Lb7G34424, Lb7G34589, Lb7G34667, Lb7G34684, Lb7G34766, Lb7G34767, Lb7G34778, Lb7G34790, Lb7G35224, Lb7G35252, Lb7G35388, Lb7G35405, Lb7G35411, Lb7G35542, Lb7G35545, Lb8G35638, Lb8G35639, Lb8G35768, Lb8G35859, Lb8G35969, Lb8G36442, Lb8G36575
Poaceae	Lolium multiflorum	4	gene-QYE76_040894, gene-QYE76_049498, gene-QYE76_050588 ... gene-QYE76_070047