Basic Information
Locus ID:
Lb5G26473
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 17982573 | 17986076 | + | Lb5G26473 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.80 | 48,280.16 Da | 59.27 | 60.53 | -0.98 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03732 | Retrotransposon gag protein | 175 | 269 | 9.4E-14 | IPR005162 |
| Pfam | PF00098 | Zinc knuckle | 393 | 409 | 4.5E-5 | IPR001878 |
| Pfam | PF03732 | Retrotransposon gag protein | 175 | 269 | 9.4E-14 | IPR005162 |
| Pfam | PF00098 | Zinc knuckle | 393 | 409 | 4.5E-5 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 394 | 407 | 9.899961 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 394 | 407 | 9.899961 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 368 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 368 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021840503.1 | uncharacterized protein LOC110780417 [Spinacia oleracea] | 0 |
| TrEMBL | A2I5E5 | RNA-directed DNA polymerase OS=Beta vulgaris OX=161934 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g086710, BVRB_8g189320 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25647, Sbi_jg35810 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1509, Seu_jg7247 |
| Amaranthaceae | Suaeda glauca | 30 | Sgl05059, Sgl08276, Sgl09509, Sgl10099, Sgl13129, Sgl14136 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000052022 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3AG0010420 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G26473, Lb8G36574 |