Basic Information
Locus ID:
Lb4G26373
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 338198916 | 338208166 | - | Lb4G26373 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 56,571.11 Da | 52.80 | 70.44 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 387 | 451 | 8.48368E-15 | - |
| CDD | cd16872 | ARID_HMGB9-like | 142 | 227 | 2.27014E-47 | - |
| CDD | cd16872 | ARID_HMGB9-like | 142 | 227 | 2.27014E-47 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 387 | 451 | 8.48368E-15 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 145 | 227 | 1.7E-16 | IPR001606 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 145 | 227 | 1.7E-16 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 387 | 451 | 8.3E-8 | IPR009071 |
| Pfam | PF00505 | HMG (high mobility group) box | 387 | 451 | 8.3E-8 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 379 | 451 | 1.57E-12 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 138 | 237 | 8.63E-29 | IPR036431 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 37 | 72 | 4.91E-6 | IPR038765 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 37 | 72 | 4.91E-6 | IPR038765 |
| SUPERFAMILY | SSF47095 | HMG-box | 379 | 451 | 1.57E-12 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 138 | 237 | 8.63E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 379 | 452 | 4.2E-13 | IPR036910 |
| Gene3D | G3DSA:3.40.395.10 | Adenoviral Proteinase; Chain A | 13 | 89 | 1.0E-5 | - |
| Gene3D | G3DSA:1.10.150.60 | - | 132 | 235 | 2.7E-25 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 132 | 235 | 2.7E-25 | IPR036431 |
| Gene3D | G3DSA:3.40.395.10 | Adenoviral Proteinase; Chain A | 13 | 89 | 1.0E-5 | - |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 379 | 452 | 4.2E-13 | IPR036910 |
| SMART | SM01014 | ARID_2 | 137 | 227 | 1.1E-28 | - |
| SMART | SM00501 | bright_3 | 141 | 232 | 1.5E-29 | IPR001606 |
| SMART | SM00501 | bright_3 | 141 | 232 | 1.5E-29 | IPR001606 |
| SMART | SM01014 | ARID_2 | 137 | 227 | 1.1E-28 | - |
| SMART | SM00398 | hmgende2 | 386 | 459 | 1.9E-7 | IPR009071 |
| SMART | SM00398 | hmgende2 | 386 | 459 | 1.9E-7 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 387 | 451 | 10.601469 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 140 | 231 | 24.701981 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 387 | 451 | 10.601469 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 140 | 231 | 24.701981 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 497 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_034686846.1 | high mobility group B protein 15 isoform X1 [Vitis riparia] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A5BNN4 | High mobility group B protein 15-like OS=Vitis vinifera OX=29760 GN=VITISV_021289 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology