Basic Information
Locus ID:
Lb4G26347
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
BEST Arabidopsis thaliana protein match is Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 334735968 | 334747477 | + | Lb4G26347 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 181,808.38 Da | 50.08 | 75.17 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02257 | Peptidase_C19 | 1375 | 1613 | 3.27088E-14 | - |
| CDD | cd02257 | Peptidase_C19 | 1375 | 1613 | 3.27088E-14 | - |
| Pfam | PF04781 | Protein of unknown function (DUF627) | 63 | 171 | 7.7E-25 | IPR006866 |
| Pfam | PF04780 | Protein of unknown function (DUF629) | 333 | 859 | 1.6E-133 | IPR006865 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 1283 | 1612 | 3.2E-24 | IPR001394 |
| Pfam | PF04781 | Protein of unknown function (DUF627) | 63 | 171 | 7.7E-25 | IPR006866 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 1283 | 1612 | 3.2E-24 | IPR001394 |
| Pfam | PF04780 | Protein of unknown function (DUF629) | 333 | 859 | 1.6E-133 | IPR006865 |
| SUPERFAMILY | SSF48452 | TPR-like | 63 | 171 | 3.25E-5 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 63 | 171 | 3.25E-5 | IPR011990 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 1283 | 1613 | 2.55E-33 | IPR038765 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 1283 | 1613 | 2.55E-33 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 1269 | 1615 | 2.0E-34 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 1269 | 1615 | 2.0E-34 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 46 | 206 | 5.0E-8 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 46 | 206 | 5.0E-8 | IPR011990 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 28 | 7.0 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1283 | 1615 | 21.592081 | IPR028889 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1283 | 1615 | 21.592081 | IPR028889 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 28 | 7.0 | - |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 391 | 412 | - | IPR013087 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 391 | 412 | - | IPR013087 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1151 | 1173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1250 | 1273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 950 | 991 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1254 | 1273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 947 | 992 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1254 | 1273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 950 | 991 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1250 | 1273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 947 | 992 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1151 | 1173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| Coils | Coil | Coil | 1018 | 1071 | - | - |
| Coils | Coil | Coil | 1219 | 1239 | - | - |
| Coils | Coil | Coil | 1219 | 1239 | - | - |
| Coils | Coil | Coil | 186 | 206 | - | - |
| Coils | Coil | Coil | 1018 | 1071 | - | - |
| Coils | Coil | Coil | 186 | 206 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47910.2 | Ubiquitin carboxyl-terminal hydrolase-related protein. | 0 |
| RefSeq | XP_031276240.1 | uncharacterized protein LOC116134720 [Pistacia vera] | 0 |
| P15975 | Ubiquitin carboxyl-terminal hydrolase 53 OS=Mus musculus OX=10090 GN=Usp53 PE=1 SV=2 | 0 | |
| TrEMBL | V4VJM8 | USP domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10018472mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg18652, jg25786, jg25787 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13754 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001005 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g115420 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30417, Sbi_jg58832 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28701 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015055 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl51123, Sgl51124, Sgl56431, Sgl56432 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000004421, gene:ENSEOMG00000006413 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0021470, CQ.Regalona.r1.5BG0022850 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30137910 |
| Apiaceae | Apium graveolens | 4 | Ag10G00103, Ag5G00278, Ag5G00635, Ag9G00633 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G002340, COCNU_08G000470 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721233 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.943.V1.1, AsparagusV1_Unassigned.266.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G00560 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G47890.1, AT3G47910.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10010059m.g.v1.0, Thhalv10010060m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g14040.v2.2, Sp5g14050.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g052230.2N, BniB06g024250.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1836 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2014 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g04470 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0131s00009.v1.0, Dusal.0131s00011.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g37010 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.868 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019078 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G26347 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4872, BH01.4800, CH01.5445 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0234970, gene-QOZ80_3BG0293150 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0402810.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_070520, gene-QYE76_070524 |
| Poaceae | Oryza coarctata | 2 | Oco05G003790, Oco06G003840 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g06950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G469700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0101245, Pt_Chr0101253, Pt_Chr0500767 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G036440, Chr04G003410, Chr07G007770, Chr12G003010 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G472500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG003110, gene_TRIDC4BG048540 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G022000.2, TraesCS4B02G281400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb005070_P001, Zm00001eb403430_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2811, nbis-gene-4394 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2004, Zma_g4353 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.2591, evm.TU.LG02.846, evm.TU.LG09.2020 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g10600, gene.Posoc04g09070 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.940, evm.TU.Scaffold_4_RagTag.536 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14623, nbisL1-mrna-28830 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15552, nbisL1-mrna-20350 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12513, nbisL1-mrna-1803, nbisL1-mrna-1804 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.344, evm.TU.utg000010l.57 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000617, Maker00008576 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14561, nbisL1-mrna-803 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1515, nbisL1-mrna-8584 |
| Salicaceae | Populus euphratica | 4 | populus_peu00641, populus_peu28544, populus_peu28545 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132600999, gene-LOC132631403, gene-LOC132632685 |
| Solanaceae | Solanum chilense | 2 | SOLCI000687300, SOLCI004957800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107012282, gene-LOC107023109 |
| Tamaricaceae | Reaumuria soongarica | 3 | MSTRG.12655_chr07_+, gene_12607, gene_15318 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G0076, TC09G1527 |
| Zosteraceae | Zostera marina | 1 | Zosma06g10440.v3.1 |