Basic Information
Locus ID:
Lb4G26322
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 333076335 | 333082676 | + | Lb4G26322 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 85,168.42 Da | 47.26 | 80.20 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 55 | 210 | 5.65812E-28 | - |
| CDD | cd05402 | NT_PAP_TUTase | 55 | 210 | 5.65812E-28 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 85 | 165 | 9.7E-9 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 363 | 421 | 9.1E-12 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 427 | 496 | 1.2E-5 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 17 | 359 | 6.9E-107 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 85 | 165 | 9.7E-9 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 363 | 421 | 9.1E-12 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 17 | 359 | 6.9E-107 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 427 | 496 | 1.2E-5 | IPR007010 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 363 | 488 | 4.32E-36 | IPR011068 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 363 | 488 | 4.32E-36 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 211 | 359 | 2.25E-63 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 13 | 209 | 5.61E-49 | IPR043519 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 13 | 209 | 5.61E-49 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 211 | 359 | 2.25E-63 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 17 | 358 | 5.6E-152 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 363 | 478 | 7.0E-27 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 363 | 478 | 7.0E-27 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 48 | 204 | 5.6E-152 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 17 | 358 | 5.6E-152 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 48 | 204 | 5.6E-152 | IPR043519 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 562 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 562 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_021776422.1 | LOW QUALITY PROTEIN: nuclear poly(A) polymerase 4-like [Chenopodium quinoa] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N4A6 | polynucleotide adenylyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology