Basic Information
Locus ID:
Lb4G26310
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Clathrin interactor EPSIN
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 332056989 | 332068615 | - | Lb4G26310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 60,204.32 Da | 35.57 | 60.93 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03571 | ENTH | 28 | 144 | 1.28836E-58 | - |
| CDD | cd03571 | ENTH | 28 | 144 | 1.28836E-58 | - |
| Pfam | PF01417 | ENTH domain | 27 | 147 | 2.3E-40 | IPR013809 |
| Pfam | PF01417 | ENTH domain | 27 | 147 | 2.3E-40 | IPR013809 |
| SUPERFAMILY | SSF48464 | ENTH/VHS domain | 7 | 152 | 3.2E-44 | IPR008942 |
| SUPERFAMILY | SSF48464 | ENTH/VHS domain | 7 | 152 | 3.2E-44 | IPR008942 |
| Gene3D | G3DSA:1.25.40.90 | - | 21 | 164 | 8.5E-51 | IPR008942 |
| Gene3D | G3DSA:1.25.40.90 | - | 21 | 164 | 8.5E-51 | IPR008942 |
| SMART | SM00273 | enth_2 | 26 | 152 | 2.4E-46 | IPR013809 |
| SMART | SM00273 | enth_2 | 26 | 152 | 2.4E-46 | IPR013809 |
| ProSiteProfiles | PS50942 | ENTH domain profile. | 20 | 152 | 37.947052 | IPR013809 |
| ProSiteProfiles | PS50942 | ENTH domain profile. | 20 | 152 | 37.947052 | IPR013809 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 248 | - | - |
| Coils | Coil | Coil | 141 | 161 | - | - |
| Coils | Coil | Coil | 141 | 161 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G11710.1 | ENTH/VHS family protein. EPSIN1 plays an important role in the vacuolar trafficking of soluble proteins at the trans-Golgi network via its interaction with gamma-ADR, VTI11, VSR1, and clathrin. Associated with actin filaments and with the Golgi complex. Expressed in most tissues. | 0 |
| RefSeq | XP_010669095.2 | clathrin interactor EPSIN 1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8VY07 | Clathrin interactor EPSIN 1 OS=Arabidopsis thaliana OX=3702 GN=EPSIN1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8D1C1 | ENTH domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_2g033020 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg4554, jg7908 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8110 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034662 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g033020 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21964, Sbi_jg29609 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15785 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018148 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl63101, Sgl66854, Sgl67713 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019787, gene:ENSEOMG00000020702 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0014850, CQ.Regalona.r1.2BG0016950 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30254280 |
| Apiaceae | Apium graveolens | 1 | Ag7G00341 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G004740, COCNU_06G004760, COCNU_14G003100 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711206, gene-LOC103714331 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2938.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G25242, Ftri7G19432 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G11710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013137m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g31900.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g025880.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2220 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2362 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g11850 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0309s00005.v1.0, Dusal.1316s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g34500 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.859 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013545 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G36904, Lb1G05159, Lb2G08411, Lb4G26310 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.3111, AH09.2179, BH02.3185, BH09.2350, CH02.3336 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0032480, gene-QOZ80_1BG0082690 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0193880.1, HORVU.MOREX.r3.3HG0287580.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_046086, gene-QYE76_055355 |
| Poaceae | Oryza coarctata | 3 | Oco02G020190, Oco07G014910, Oco08G014410 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g53670.1, LOC_Os04g51120.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G269700, gene-BS78_06G215300 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0301451, Pt_Chr0301491, Pt_Chr0602160, Pt_Chr0602545 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G010130, Chr05G023210, Chr23G003460, Chr25G003980 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G751300, Tel3E01G458500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG063240, gene_TRIDC2BG067160 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G440100.1, TraesCS2B02G461300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb071930_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-26411, nbis-gene-5736 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11090, Zma_g21904 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.2330, evm.TU.LG07.1092, evm.TU.LG07.741 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g21800 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.740 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13753 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8855 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-8985, nbisL1-mrna-8986 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.517 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014904 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3868 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7982 |
| Salicaceae | Populus euphratica | 1 | populus_peu12705 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600355, gene-LOC132635860 |
| Solanaceae | Solanum chilense | 1 | SOLCI000690800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003266, gene-LOC107028413 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.32785_chr09_-, gene_3750 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2545, TC02G0312 |
| Zosteraceae | Zostera marina | 3 | Zosma01g22800.v3.1, Zosma05g25360.v3.1, Zosma06g11420.v3.1 |