Basic Information
Locus ID:
Lb4G26289
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 331312691 | 331314580 | + | Lb4G26289 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 41,598.19 Da | 57.83 | 75.22 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 153 | 196 | 2.37678E-18 | - |
| CDD | cd16454 | RING-H2_PA-TM-RING | 153 | 196 | 2.37678E-18 | - |
| Pfam | PF13639 | Ring finger domain | 153 | 196 | 7.0E-13 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 153 | 196 | 7.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 127 | 205 | 3.03E-20 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 127 | 205 | 3.03E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 200 | 3.9E-21 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 200 | 3.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 154 | 195 | 2.1E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 154 | 195 | 2.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 154 | 196 | 12.031935 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 154 | 196 | 12.031935 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 107 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_050276781.1 | RING-H2 finger protein ATL47 [Quercus robur] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7N2L9J9 | RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology