Basic Information
Locus ID:
Lb4G26267
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 329595127 | 329602140 | - | Lb4G26267 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 137,999.30 Da | 52.68 | 86.04 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1096 | 1138 | 8.77209E-19 | - |
| CDD | cd12108 | Hr-like | 587 | 733 | 3.74944E-19 | - |
| CDD | cd12108 | Hr-like | 45 | 177 | 6.34625E-26 | - |
| CDD | cd12108 | Hr-like | 587 | 733 | 3.74944E-19 | - |
| CDD | cd12108 | Hr-like | 45 | 177 | 6.34625E-26 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1096 | 1138 | 8.77209E-19 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 42 | 179 | 9.8E-12 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 967 | 1042 | 2.3E-16 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 42 | 179 | 9.8E-12 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 967 | 1042 | 2.3E-16 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1094 | 1144 | 2.27E-5 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1034 | 1087 | 4.45E-15 | IPR037275 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1034 | 1087 | 4.45E-15 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1094 | 1144 | 2.27E-5 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 41 | 197 | 1.8E-23 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 581 | 752 | 8.0E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1089 | 1140 | 1.4E-6 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1089 | 1140 | 1.4E-6 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 581 | 752 | 8.0E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 41 | 197 | 1.8E-23 | - |
| SMART | SM00184 | ring_2 | 1096 | 1137 | 0.0027 | IPR001841 |
| SMART | SM00184 | ring_2 | 1096 | 1137 | 0.0027 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 960 | 1029 | 23.197142 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1096 | 1138 | 10.866448 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 960 | 1029 | 23.197142 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1032 | 1095 | 25.848337 | IPR017921 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1032 | 1095 | 25.848337 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1096 | 1138 | 10.866448 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74770.1 | zinc ion binding. | 0 |
| RefSeq | XP_002266572.2 | PREDICTED: zinc finger protein BRUTUS-like At1g18910 isoform X1 [Vitis vinifera] | 0 |
| F4HVS0 | Zinc finger protein BRUTUS-like At1g74770 OS=Arabidopsis thaliana OX=3702 GN=At1g74770 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5BHZ8 | Zinc finger protein BRUTUS-like At1g18910 OS=Nyssa sinensis OX=561372 GN=F0562_023494 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology