Basic Information
Locus ID:
Lb4G26106
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 315422669 | 315427311 | + | Lb4G26106 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 50,123.50 Da | 39.71 | 74.47 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 199 | 349 | 5.741E-35 | IPR000608 |
| CDD | cd00195 | UBCc | 199 | 349 | 5.741E-35 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 201 | 346 | 1.8E-23 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 201 | 346 | 1.8E-23 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 183 | 364 | 2.61E-39 | IPR016135 |
| SUPERFAMILY | SSF54495 | UBC-like | 183 | 364 | 2.61E-39 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 158 | 431 | 3.1E-83 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 158 | 431 | 3.1E-83 | IPR016135 |
| SMART | SM00212 | ubc_7 | 199 | 355 | 1.7E-21 | - |
| SMART | SM00212 | ubc_7 | 199 | 355 | 1.7E-21 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 196 | 355 | 32.490551 | IPR000608 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 196 | 355 | 32.490551 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 72 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15355.1 | ubiquitin-conjugating enzyme 25. | 0 |
| RefSeq | XP_010689010.1 | putative ubiquitin-conjugating enzyme E2 38 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9C918 | Putative ubiquitin-conjugating enzyme E2 38 OS=Arabidopsis thaliana OX=3702 GN=UBC38 PE=3 SV=2 | 0 | |
| TrEMBL | A0A7C8Z5A0 | E2 ubiquitin-conjugating enzyme OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology