Basic Information
Locus ID:
Lb4G25999
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 306292281 | 306296798 | - | Lb4G25999 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 24,551.72 Da | 60.21 | 58.56 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 98 | 149 | 3.4E-8 | IPR011016 |
| Pfam | PF12906 | RING-variant domain | 98 | 149 | 3.4E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 95 | 153 | 1.73E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 95 | 153 | 1.73E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 160 | 2.4E-14 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 160 | 2.4E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 97 | 150 | 4.1E-17 | IPR011016 |
| SMART | SM00744 | ringv_2 | 97 | 150 | 4.1E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 90 | 156 | 17.837721 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 90 | 156 | 17.837721 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 67 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_018821922.1 | uncharacterized protein LOC108991946 isoform X1 [Juglans regia] | 0 |
| TrEMBL | A0A5N6QES3 | RING-CH-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_001384 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology