Basic Information
Locus ID:
Lb4G25948
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Ras GTPase-activating protein-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 301999856 | 302006153 | + | Lb4G25948 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 48,168.81 Da | 57.31 | 68.76 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00780 | NTF2 | 43 | 165 | 2.61239E-43 | IPR018222 |
| CDD | cd00780 | NTF2 | 43 | 165 | 2.61239E-43 | IPR018222 |
| CDD | cd00590 | RRM_SF | 336 | 407 | 1.01303E-12 | - |
| CDD | cd00590 | RRM_SF | 336 | 407 | 1.01303E-12 | - |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 47 | 163 | 6.2E-29 | IPR002075 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 336 | 402 | 1.7E-14 | IPR000504 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 47 | 163 | 6.2E-29 | IPR002075 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 336 | 402 | 1.7E-14 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 322 | 438 | 7.52E-20 | IPR035979 |
| SUPERFAMILY | SSF54427 | NTF2-like | 43 | 164 | 3.73E-38 | IPR032710 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 322 | 438 | 7.52E-20 | IPR035979 |
| SUPERFAMILY | SSF54427 | NTF2-like | 43 | 164 | 3.73E-38 | IPR032710 |
| Gene3D | G3DSA:3.10.450.50 | - | 38 | 167 | 4.3E-40 | - |
| Gene3D | G3DSA:3.10.450.50 | - | 38 | 167 | 4.3E-40 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 321 | 441 | 1.4E-18 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 321 | 441 | 1.4E-18 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 335 | 407 | 3.3E-14 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 335 | 407 | 3.3E-14 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 47 | 163 | 32.110889 | IPR018222 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 47 | 163 | 32.110889 | IPR018222 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 334 | 411 | 12.696778 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 334 | 411 | 12.696778 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 429 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60980.2 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 0 |
| RefSeq | XP_010695230.2 | nuclear transport factor 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7BIQ6 | G3BP-like protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_037507 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology