Basic Information
Locus ID:
Lb4G25871
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 294701874 | 294706134 | - | Lb4G25871 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 127,396.58 Da | 33.38 | 92.02 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 1 | 237 | 9.51169E-57 | - |
| CDD | cd00200 | WD40 | 1 | 237 | 9.51169E-57 | - |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 735 | 1139 | 4.6E-160 | IPR010714 |
| Pfam | PF04053 | Coatomer WD associated region | 263 | 688 | 1.3E-129 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 56 | 90 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 118 | 151 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 14 | 51 | 2.6E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 161 | 196 | 1.9E-5 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 735 | 1139 | 4.6E-160 | IPR010714 |
| Pfam | PF00400 | WD domain, G-beta repeat | 56 | 90 | 0.002 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 263 | 688 | 1.3E-129 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 14 | 51 | 2.6E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 161 | 196 | 1.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 118 | 151 | 0.0013 | IPR001680 |
| SUPERFAMILY | SSF69322 | Tricorn protease domain 2 | 243 | 476 | 3.01E-5 | - |
| SUPERFAMILY | SSF69322 | Tricorn protease domain 2 | 243 | 476 | 3.01E-5 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 305 | 3.43E-53 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 305 | 3.43E-53 | IPR036322 |
| Gene3D | G3DSA:1.25.40.470 | - | 560 | 732 | 1.6E-62 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 239 | 2.4E-90 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 560 | 732 | 1.6E-62 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 239 | 2.4E-90 | IPR015943 |
| SMART | SM00320 | WD40_4 | 199 | 237 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 157 | 196 | 1.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 113 | 152 | 5.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 12 | 51 | 3.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 157 | 196 | 1.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 113 | 152 | 5.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 54 | 93 | 9.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 237 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 54 | 93 | 9.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 12 | 51 | 3.0E-9 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 1 | 1135 | 0.0 | IPR016391 |
| PIRSF | PIRSF003354 | Alpha-COP | 1 | 1135 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 61 | 90 | 9.840087 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 164 | 205 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 164 | 205 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 120 | 161 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 120 | 154 | 10.337415 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 61 | 90 | 9.840087 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 19 | 51 | 11.207411 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 164 | 197 | 12.130133 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 164 | 197 | 12.130133 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 120 | 154 | 10.337415 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 19 | 51 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 19 | 60 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 120 | 161 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 19 | 60 | 13.649761 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 183 | 197 | 6.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 139 | 153 | 6.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 139 | 153 | 6.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 183 | 197 | 6.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 38 | 52 | 6.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 38 | 52 | 6.3E-6 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_012067197.1 | coatomer subunit alpha-1 [Jatropha curcas] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A834G8B8 | Coatomer subunit alpha OS=Rhododendron simsii OX=118357 GN=RHSIM_Rhsim11G0182000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology