Basic Information
Locus ID:
Lb4G25853
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
DA1-related 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 293658172 | 293660659 | + | Lb4G25853 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 49,049.88 Da | 70.75 | 77.21 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 113 | 156 | 1.30417E-22 | - |
| CDD | cd09396 | LIM_DA1 | 113 | 156 | 1.30417E-22 | - |
| Pfam | PF12315 | Protein DA1 | 229 | 428 | 1.4E-86 | IPR022087 |
| Pfam | PF00412 | LIM domain | 115 | 157 | 1.9E-7 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 229 | 428 | 1.4E-86 | IPR022087 |
| Pfam | PF00412 | LIM domain | 115 | 157 | 1.9E-7 | IPR001781 |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 103 | 160 | 1.2E-11 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 103 | 160 | 1.2E-11 | - |
| SMART | SM00132 | lim_4 | 108 | 155 | 5.6E-6 | IPR001781 |
| SMART | SM00132 | lim_4 | 108 | 155 | 5.6E-6 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 94 | 162 | 8.5636 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 94 | 162 | 8.5636 | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 376 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_010254980.1 | PREDICTED: protein DA1-related 1-like [Nelumbo nucifera] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5B7ATH8 | LIM zinc-binding domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_029215 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology