Basic Information
Locus ID:
Lb4G25843
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
heat shock factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 293472429 | 293476526 | - | Lb4G25843 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 40,115.02 Da | 40.83 | 61.56 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00447 | HSF-type DNA-binding | 10 | 99 | 3.6E-32 | IPR000232 |
| Pfam | PF00447 | HSF-type DNA-binding | 10 | 99 | 3.6E-32 | IPR000232 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 7 | 99 | 1.5E-33 | IPR036390 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 7 | 99 | 1.5E-33 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 2 | 100 | 2.1E-37 | IPR036388 |
| Gene3D | G3DSA:1.10.10.10 | - | 2 | 100 | 2.1E-37 | IPR036388 |
| SMART | SM00415 | hsfneu3 | 6 | 99 | 1.9E-59 | IPR000232 |
| SMART | SM00415 | hsfneu3 | 6 | 99 | 1.9E-59 | IPR000232 |
| ProSitePatterns | PS00434 | HSF-type DNA-binding domain signature. | 49 | 73 | - | IPR000232 |
| ProSitePatterns | PS00434 | HSF-type DNA-binding domain signature. | 49 | 73 | - | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 48 | 60 | 1.2E-19 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 61 | 73 | 1.2E-19 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 10 | 33 | 1.2E-19 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 48 | 60 | 1.2E-19 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 10 | 33 | 1.2E-19 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 61 | 73 | 1.2E-19 | IPR000232 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 189 | - | - |
| Coils | Coil | Coil | 184 | 204 | - | - |
| Coils | Coil | Coil | 184 | 204 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36990.1 | heat shock factor 4. encodes a protein whose sequence is similar to heat shock factors that regulate the expression of heat shock proteins. Transcript level is increased in response to heat shock. However, overexpression of this gene did not result in the increase of decrease of heat shock proteins. | 0 |
| RefSeq | XP_050207084.1 | heat shock factor protein HSF24 [Mercurialis annua] | 0 |
| P22335 | Heat shock factor protein HSF24 OS=Solanum peruvianum OX=4082 GN=HSF24 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2N9H8W2 | HSF_DOMAIN domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35972 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology