Basic Information
Locus ID:
Lb4G25833
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
UBP12
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 291590445 | 291652557 | + | Lb4G25833 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 130,166.02 Da | 45.20 | 81.54 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 195 | 523 | 2.68856E-165 | - |
| CDD | cd00121 | MATH | 54 | 177 | 2.74439E-40 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 195 | 523 | 2.68856E-165 | - |
| CDD | cd00121 | MATH | 54 | 177 | 2.74439E-40 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 622 | 874 | 1.1E-76 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 884 | 1021 | 5.7E-34 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 622 | 874 | 1.1E-76 | IPR024729 |
| Pfam | PF00917 | MATH domain | 59 | 179 | 7.4E-20 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 197 | 518 | 3.1E-47 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 884 | 1021 | 5.7E-34 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 197 | 518 | 3.1E-47 | IPR001394 |
| Pfam | PF00917 | MATH domain | 59 | 179 | 7.4E-20 | IPR002083 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 192 | 550 | 4.71E-98 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 50 | 181 | 2.62E-41 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 50 | 181 | 2.62E-41 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 192 | 550 | 4.71E-98 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 800 | 897 | 3.1E-28 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 194 | 522 | 2.6E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 800 | 897 | 3.1E-28 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 51 | 193 | 1.4E-52 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 682 | 799 | 3.9E-43 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 682 | 799 | 3.9E-43 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 51 | 193 | 1.4E-52 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 194 | 522 | 2.6E-89 | - |
| SMART | SM00061 | math_3 | 54 | 158 | 5.9E-21 | IPR002083 |
| SMART | SM00061 | math_3 | 54 | 158 | 5.9E-21 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 52 | 177 | 38.979965 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 197 | 521 | 40.432293 | IPR028889 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 197 | 521 | 40.432293 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 52 | 177 | 38.979965 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 437 | 454 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 437 | 454 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 198 | 213 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 198 | 213 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| Coils | Coil | Coil | 534 | 557 | - | - |
| Coils | Coil | Coil | 534 | 557 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_010677617.1 | ubiquitin C-terminal hydrolase 12 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9CRZ2 | ubiquitinyl hydrolase 1 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology