Basic Information
Locus ID:
Lb4G25803
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 288604636 | 288608868 | + | Lb4G25803 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.46 | 20,903.12 Da | 54.21 | 71.96 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 143 | 3.80885E-51 | IPR000608 |
| CDD | cd00195 | UBCc | 7 | 143 | 3.80885E-51 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 11 | 142 | 7.6E-40 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 11 | 142 | 7.6E-40 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 4 | 150 | 6.06E-46 | IPR016135 |
| SUPERFAMILY | SSF54495 | UBC-like | 4 | 150 | 6.06E-46 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 162 | 7.6E-50 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 162 | 7.6E-50 | IPR016135 |
| SMART | SM00212 | ubc_7 | 4 | 148 | 2.4E-49 | - |
| SMART | SM00212 | ubc_7 | 4 | 148 | 2.4E-49 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 148 | 42.368973 | IPR000608 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 148 | 42.368973 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 73 | 89 | - | IPR023313 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 73 | 89 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 184 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63800.1 | ubiquitin-conjugating enzyme 5. | 0 |
| RefSeq | XP_021733656.1 | ubiquitin-conjugating enzyme E2-23 kDa-like [Chenopodium quinoa] | 0 |
| P42749 | Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5B6YI89 | Putative Ubiquitin-conjugating enzyme E2 5 isoform 1 OS=Davidia involucrata OX=16924 GN=Din_000892 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology