Basic Information
Locus ID:
Lb4G25722
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 279977910 | 279983257 | - | Lb4G25722 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 39,753.45 Da | 51.13 | 79.86 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 2 | 110 | 1.8E-9 | IPR023801 |
| Pfam | PF00850 | Histone deacetylase domain | 146 | 184 | 4.9E-11 | IPR023801 |
| Pfam | PF00850 | Histone deacetylase domain | 146 | 184 | 4.9E-11 | IPR023801 |
| Pfam | PF00850 | Histone deacetylase domain | 2 | 110 | 1.8E-9 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 1 | 266 | 2.25E-44 | IPR023696 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 1 | 266 | 2.25E-44 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 188 | 279 | 2.6E-13 | IPR037138 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 1 | 113 | 5.0E-20 | IPR037138 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 141 | 187 | 1.6E-12 | IPR037138 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 141 | 187 | 1.6E-12 | IPR037138 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 1 | 113 | 5.0E-20 | IPR037138 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 188 | 279 | 2.6E-13 | IPR037138 |
| PRINTS | PR01271 | Histone deacetylase signature | 91 | 111 | 2.3E-33 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 1 | 18 | 2.3E-33 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 70 | 87 | 2.3E-33 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 34 | 52 | 2.3E-33 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 70 | 87 | 2.3E-33 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 1 | 18 | 2.3E-33 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 91 | 111 | 2.3E-33 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 34 | 52 | 2.3E-33 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 332 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_009780500.1 | PREDICTED: histone deacetylase 6 [Nicotiana sylvestris] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S4DL73 | Histone deacetylase OS=Nicotiana tabacum OX=4097 GN=LOC107830951 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology