Basic Information
Locus ID:
Lb4G25461
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 235656302 | 235699731 | - | Lb4G25461 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 485,885.34 Da | 46.05 | 88.33 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2187 | 2380 | 2.5E-9 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4204 | 4273 | 4.7E-7 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 374 | 1.7E-68 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1983 | 2111 | 2.3E-12 | IPR009291 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 107 | 6.8E-30 | IPR026854 |
| Pfam | PF06398 | Integral peroxisomal membrane peroxin | 2847 | 2944 | 2.9E-9 | IPR010482 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 558 | 778 | 1.4E-28 | IPR031642 |
| Pfam | PF00169 | PH domain | 797 | 905 | 2.7E-7 | IPR001849 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 374 | 1.7E-68 | IPR031646 |
| Pfam | PF00169 | PH domain | 797 | 905 | 2.7E-7 | IPR001849 |
| Pfam | PF06398 | Integral peroxisomal membrane peroxin | 2847 | 2944 | 2.9E-9 | IPR010482 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1983 | 2111 | 2.3E-12 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2187 | 2380 | 2.5E-9 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 558 | 778 | 1.4E-28 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4204 | 4273 | 4.7E-7 | IPR009291 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 107 | 6.8E-30 | IPR026854 |
| SUPERFAMILY | SSF50729 | PH domain-like | 792 | 925 | 7.95E-12 | - |
| SUPERFAMILY | SSF50729 | PH domain-like | 792 | 925 | 7.95E-12 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 793 | 909 | 9.8E-10 | IPR011993 |
| Gene3D | G3DSA:2.30.29.30 | - | 793 | 909 | 9.8E-10 | IPR011993 |
| SMART | SM00233 | PH_update | 795 | 908 | 1.3E-9 | IPR001849 |
| SMART | SM00233 | PH_update | 795 | 908 | 1.3E-9 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 794 | 906 | 10.5094 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 794 | 906 | 10.5094 | IPR001849 |
| Coils | Coil | Coil | 606 | 626 | - | - |
| Coils | Coil | Coil | 606 | 626 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_028077973.1 | LOW QUALITY PROTEIN: uncharacterized protein LOC114279888 [Camellia sinensis] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J4ZTK8 | PH domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_012573 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology