Basic Information
Locus ID:
Lb4G25393
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 222574800 | 222577604 | + | Lb4G25393 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 71,526.46 Da | 52.61 | 91.24 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 372 | 561 | 6.8E-29 | IPR000477 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 372 | 561 | 6.8E-29 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 371 | 529 | 1.93E-6 | IPR043502 |
| SUPERFAMILY | SSF56219 | DNase I-like | 43 | 143 | 5.18E-8 | IPR036691 |
| SUPERFAMILY | SSF56219 | DNase I-like | 43 | 143 | 5.18E-8 | IPR036691 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 371 | 529 | 1.93E-6 | IPR043502 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 22 | 143 | 3.6E-7 | IPR036691 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 22 | 143 | 3.6E-7 | IPR036691 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 200 | 562 | 8.81412 | IPR000477 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 200 | 562 | 8.81412 | IPR000477 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20520.1 | RNA binding;RNA-directed DNA polymerases. | 0 |
| RefSeq | XP_050216415.1 | uncharacterized protein LOC126667478 [Mercurialis annua] | 0 |
| P92555 | Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1 | 0 | |
| TrEMBL | A0A2K3PL42 | Ribonuclease H (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g012719 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23361 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017683 |
| Amaranthaceae | Suaeda glauca | 26 | Sgl03531, Sgl03532, Sgl06702, Sgl08674, Sgl08675, Sgl10543 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0013210 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20438, Lb4G25393 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.137 |