Basic Information
Locus ID:
Lb4G25132
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 183061575 | 183070760 | - | Lb4G25132 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 79,371.21 Da | 38.08 | 73.93 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 490 | 678 | 1.40519E-50 | - |
| CDD | cd10316 | RGL4_M | 379 | 478 | 7.3212E-31 | IPR029413 |
| CDD | cd10320 | RGL4_N | 51 | 345 | 3.9989E-72 | - |
| CDD | cd10320 | RGL4_N | 51 | 345 | 3.9989E-72 | - |
| CDD | cd10316 | RGL4_M | 379 | 478 | 7.3212E-31 | IPR029413 |
| CDD | cd10317 | RGL4_C | 490 | 678 | 1.40519E-50 | - |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 403 | 474 | 2.4E-20 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 488 | 677 | 4.0E-52 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 43 | 248 | 5.0E-72 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 488 | 677 | 4.0E-52 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 403 | 474 | 2.4E-20 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 43 | 248 | 5.0E-72 | IPR010325 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 50 | 341 | 6.28E-9 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 378 | 473 | 2.55E-6 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 50 | 341 | 6.28E-9 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 485 | 678 | 5.19E-43 | IPR008979 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 485 | 678 | 5.19E-43 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 378 | 473 | 2.55E-6 | IPR013784 |
| Gene3D | G3DSA:2.60.120.260 | - | 485 | 678 | 3.2E-15 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 46 | 352 | 3.4E-13 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 485 | 678 | 3.2E-15 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 46 | 352 | 3.4E-13 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 376 | 463 | 2.2E-6 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 376 | 463 | 2.2E-6 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_021747845.1 | probable rhamnogalacturonate lyase B [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MBF5 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology