Basic Information
Locus ID:
Lb4G25112
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 181256832 | 181261704 | + | Lb4G25112 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 58,893.56 Da | 52.38 | 58.91 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 61 | 111 | 4.26592E-16 | - |
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 61 | 111 | 4.26592E-16 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 131 | 192 | 1.3E-15 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 209 | 257 | 5.2E-10 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 131 | 192 | 1.3E-15 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 209 | 257 | 5.2E-10 | IPR002867 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 497 | 525 | 4.63E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 211 | 259 | 4.04E-17 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 497 | 525 | 4.63E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 211 | 259 | 4.04E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 56 | 139 | 6.67E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 56 | 139 | 6.67E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 199 | 2.12E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 199 | 2.12E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 55 | 145 | 1.7E-18 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 188 | 443 | 7.7E-85 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 188 | 443 | 7.7E-85 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 55 | 145 | 1.7E-18 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 130 | 192 | 2.0E-23 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 196 | 266 | 0.024 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 130 | 192 | 2.0E-23 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 196 | 266 | 0.024 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 61 | 107 | 9.169853 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 61 | 107 | 9.169853 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 57 | 270 | 51.393936 | IPR044066 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 57 | 270 | 51.393936 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 502 | 521 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 502 | 521 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 494 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 494 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_021281536.1 | probable E3 ubiquitin-protein ligase ARI8 [Herrania umbratica] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J1A454 | RBR-type E3 ubiquitin transferase OS=Herrania umbratica OX=108875 GN=LOC110414600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology