halophFGD

Basic Information

Locus ID: Lb4G24791

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Short Name: AGO5

Description: Belongs to the argonaute family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr04	154831227	154840027	-	Lb4G24791

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.35	89,987.34 Da	37.14	74.62	-0.47

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd02846	PAZ_argonaute_like	545	657	2.04147E-31	-
CDD	cd02846	PAZ_argonaute_like	545	657	2.04147E-31	-
Pfam	PF08699	Argonaute linker 1 domain	496	544	1.2E-16	IPR014811
Pfam	PF16488	Argonaute linker 2 domain	684	730	3.3E-10	IPR032472
Pfam	PF16486	N-terminal domain of argonaute	353	485	1.0E-32	IPR032474
Pfam	PF04827	Plant transposon protein	102	205	2.8E-42	IPR006912
Pfam	PF02170	PAZ domain	558	675	1.5E-22	IPR003100
Pfam	PF16488	Argonaute linker 2 domain	684	730	3.3E-10	IPR032472
Pfam	PF02170	PAZ domain	558	675	1.5E-22	IPR003100
Pfam	PF16486	N-terminal domain of argonaute	353	485	1.0E-32	IPR032474
Pfam	PF08699	Argonaute linker 1 domain	496	544	1.2E-16	IPR014811
Pfam	PF04827	Plant transposon protein	102	205	2.8E-42	IPR006912
SUPERFAMILY	SSF101690	PAZ domain	541	698	7.38E-49	IPR036085
SUPERFAMILY	SSF101690	PAZ domain	541	698	7.38E-49	IPR036085
Gene3D	G3DSA:3.40.50.2300	-	722	802	2.6E-11	-
Gene3D	G3DSA:2.170.260.10	paz domain	541	662	8.4E-36	-
Gene3D	G3DSA:3.40.50.2300	-	722	802	2.6E-11	-
Gene3D	G3DSA:2.170.260.10	paz domain	541	662	8.4E-36	-
SMART	SM00949	PAZ_2_a_3	550	677	5.0E-6	IPR003100
SMART	SM01163	DUF1785_2	494	545	3.9E-20	IPR014811
SMART	SM00949	PAZ_2_a_3	550	677	5.0E-6	IPR003100
SMART	SM01163	DUF1785_2	494	545	3.9E-20	IPR014811
ProSiteProfiles	PS50821	PAZ domain profile.	546	658	24.632351	IPR003100
ProSiteProfiles	PS50821	PAZ domain profile.	546	658	24.632351	IPR003100
MobiDBLite	mobidb-lite	consensus disorder prediction	277	302	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	214	257	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	329	351	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	277	302	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	329	351	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	214	257	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0016788 (hydrolase activity, acting on ester bonds)

KEGG Pathway

KO Term:

K11593 (eukaryotic translation initiation factor 2C)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G27880.1	Argonaute family protein.
RefSeq	XP_021732845.1	protein argonaute 5-like isoform X2 [Chenopodium quinoa]
Swiss-Prot	Q9SJK3	Protein argonaute 5 OS=Arabidopsis thaliana OX=3702 GN=AGO5 PE=1 SV=2
TrEMBL	A0A5B6ZDN0	Protein argonaute 5 OS=Davidia involucrata OX=16924 GN=Din_011691 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	2	gene_22672, gene_9527
Amaranthaceae	Atriplex hortensis	1	Ah037633
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17534, Sbi_jg23502, Sbi_jg31094, Sbi_jg44651
Amaranthaceae	Salicornia europaea	1	Seu_jg2289
Amaranthaceae	Suaeda glauca	29	Sgl13894, Sgl14989, Sgl15286, Sgl19056, Sgl19062, Sgl20125 ... Sgl21013, Sgl23627, Sgl25509, Sgl25511, Sgl26382, Sgl30139, Sgl30675, Sgl30677, Sgl32069, Sgl33032, Sgl36107, Sgl37368, Sgl38298, Sgl39155, Sgl41408, Sgl42437, Sgl47166, Sgl52987, Sgl58263, Sgl64553, Sgl68999, Sgl80159, Sgl82588
Amaranthaceae	Chenopodium album	12	gene:ENSEOMG00000002675, gene:ENSEOMG00000003176 ... gene:ENSEOMG00000005980, gene:ENSEOMG00000006972, gene:ENSEOMG00000008354, gene:ENSEOMG00000010408, gene:ENSEOMG00000015758, gene:ENSEOMG00000023199, gene:ENSEOMG00000033073, gene:ENSEOMG00000041091, gene:ENSEOMG00000042107, gene:ENSEOMG00000045505
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.1AG0008090, CQ.Regalona.r1.1BG0011240 ... CQ.Regalona.r1.2AG0012720, CQ.Regalona.r1.3AG0010390, CQ.Regalona.r1.4AG0011230, CQ.Regalona.r1.6BG0003030, CQ.Regalona.r1.6BG0003040, CQ.Regalona.r1.8BG0004570
Asteraceae	Flaveria trinervia	45	Ftri10G00597, Ftri10G26719, Ftri12G20029, Ftri12G24906 ... Ftri13G13396, Ftri15G06995, Ftri15G13549, Ftri15G13596, Ftri15G18758, Ftri15G19836, Ftri15G24621, Ftri15G30983, Ftri15G33916, Ftri16G25592, Ftri17G00492, Ftri17G01881, Ftri17G20055, Ftri17G23311, Ftri18G28794, Ftri1G04239, Ftri1G12666, Ftri1G15710, Ftri1G24258, Ftri2G09443, Ftri3G07942, Ftri3G12909, Ftri3G21570, Ftri4G08464, Ftri4G12050, Ftri4G13649, Ftri4G26984, Ftri4G27174, Ftri5G06904, Ftri5G09626, Ftri5G12053, Ftri5G16428, Ftri5G27392, Ftri6G05440, Ftri6G19733, Ftri8G21907, Ftri9G07673, Ftri9G13518, Ftri9G26070, Ftri9G26856, Ftri9G27788
Brassicaceae	Arabidopsis thaliana	2	AT2G13770.1, AT5G35490.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10029355m.g.v1.0, Thhalv10029366m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g15125.v2.2, Sp5g15613.v2.2
Brassicaceae	Brassica nigra	98	BniB01g008010.2N, BniB01g008440.2N, BniB01g014430.2N ... BniB01g020060.2N, BniB01g022670.2N, BniB01g024570.2N, BniB01g024620.2N, BniB01g026100.2N, BniB01g026220.2N, BniB01g044220.2N, BniB01g044260.2N, BniB01g047360.2N, BniB01g047770.2N, BniB01g050490.2N, BniB01g055830.2N, BniB02g017170.2N, BniB02g018650.2N, BniB02g019110.2N, BniB02g022340.2N, BniB02g022720.2N, BniB02g025570.2N, BniB02g026550.2N, BniB02g029590.2N, BniB02g029990.2N, BniB02g031740.2N, BniB02g038430.2N, BniB02g041490.2N, BniB02g046700.2N, BniB02g047910.2N, BniB03g025690.2N, BniB03g027500.2N, BniB03g034090.2N, BniB03g038100.2N, BniB03g041280.2N, BniB03g041990.2N, BniB03g055910.2N, BniB04g021560.2N, BniB04g033420.2N, BniB04g035240.2N, BniB04g035320.2N, BniB04g035560.2N, BniB04g037050.2N, BniB04g038500.2N, BniB04g043260.2N, BniB04g043900.2N, BniB04g043940.2N, BniB04g058790.2N, BniB04g064300.2N, BniB05g006700.2N, BniB05g035250.2N, BniB05g036260.2N, BniB05g037790.2N, BniB05g043180.2N, BniB05g047170.2N, BniB05g058670.2N, BniB05g063580.2N, BniB05g063750.2N, BniB05g063800.2N, BniB05g063970.2N, BniB05g066560.2N, BniB05g070310.2N, BniB05g071580.2N, BniB05g072240.2N, BniB05g074950.2N, BniB05g075650.2N, BniB06g006050.2N, BniB06g016120.2N, BniB06g016130.2N, BniB06g017240.2N, BniB06g022480.2N, BniB06g026720.2N, BniB06g042710.2N, BniB06g043520.2N, BniB06g044450.2N, BniB06g045710.2N, BniB06g050480.2N, BniB06g051560.2N, BniB06g055620.2N, BniB07g010830.2N, BniB07g012350.2N, BniB07g015730.2N, BniB07g018300.2N, BniB07g031320.2N, BniB07g032920.2N, BniB07g037740.2N, BniB07g040430.2N, BniB08g016110.2N, BniB08g022060.2N, BniB08g023670.2N, BniB08g023680.2N, BniB08g030860.2N, BniB08g034340.2N, BniB08g041230.2N, BniB08g042970.2N, BniB08g045480.2N, BniB08g058160.2N, BniB08g064680.2N, BniB08g076190.2N
Plantaginaceae	Plantago ovata	13	Pov_00001907, Pov_00004169, Pov_00007489, Pov_00009824 ... Pov_00010762, Pov_00011271, Pov_00015903, Pov_00017312, Pov_00019033, Pov_00030062, Pov_00036712, Pov_00038159, Pov_00038367
Plumbaginaceae	Limonium bicolor	1	Lb4G24791
Poaceae	Echinochloa crus-galli	58	AH01.2602, AH01.4600, AH01.4847, AH02.2871, AH02.853 ... AH03.1029, AH03.1341, AH03.2886, AH03.3034, AH03.576, AH04.836, AH05.1484, AH05.3125, AH06.1317, AH06.2004, AH06.2521, AH07.1745, AH07.2490, AH07.531, AH09.994, BH01.4568, BH01.4688, BH02.1260, BH03.1207, BH03.1277, BH03.1649, BH03.3471, BH04.372, BH04.603, BH04.632, BH04.634, BH04.636, BH06.1505, BH07.1482, BH07.769, CH01.1672, CH01.3094, CH01.3095, CH01.3310, CH01.4406, CH01.5265, CH02.2737, CH03.1346, CH03.4193, CH04.1660, CH04.2655, CH04.317, CH05.2854, CH06.246, CH07.1304, CH07.1874, CH07.2572, CH07.2694, CH08.1650, CH08.851, CH09.2888, CH09.514, CH09.642
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_4BG0334010, gene-QOZ80_6BG0474060
Poaceae	Lolium multiflorum	101	gene-QYE76_000413, gene-QYE76_000879, gene-QYE76_001451 ... gene-QYE76_001908, gene-QYE76_001978, gene-QYE76_002828, gene-QYE76_003038, gene-QYE76_004261, gene-QYE76_005393, gene-QYE76_005754, gene-QYE76_005769, gene-QYE76_007366, gene-QYE76_007561, gene-QYE76_007994, gene-QYE76_011931, gene-QYE76_012252, gene-QYE76_014179, gene-QYE76_014293, gene-QYE76_014663, gene-QYE76_015072, gene-QYE76_015444, gene-QYE76_016552, gene-QYE76_017276, gene-QYE76_018223, gene-QYE76_018224, gene-QYE76_018398, gene-QYE76_018452, gene-QYE76_020031, gene-QYE76_020423, gene-QYE76_020452, gene-QYE76_020860, gene-QYE76_021343, gene-QYE76_021487, gene-QYE76_022163, gene-QYE76_022400, gene-QYE76_022859, gene-QYE76_023688, gene-QYE76_023974, gene-QYE76_024080, gene-QYE76_025308, gene-QYE76_026450, gene-QYE76_029569, gene-QYE76_030187, gene-QYE76_031972, gene-QYE76_031988, gene-QYE76_032040, gene-QYE76_033113, gene-QYE76_033989, gene-QYE76_035160, gene-QYE76_036159, gene-QYE76_036178, gene-QYE76_037147, gene-QYE76_040576, gene-QYE76_041792, gene-QYE76_041972, gene-QYE76_042790, gene-QYE76_042999, gene-QYE76_043745, gene-QYE76_044222, gene-QYE76_044471, gene-QYE76_045419, gene-QYE76_046190, gene-QYE76_048237, gene-QYE76_048430, gene-QYE76_048777, gene-QYE76_049240, gene-QYE76_049433, gene-QYE76_050170, gene-QYE76_051460, gene-QYE76_051951, gene-QYE76_052337, gene-QYE76_053627, gene-QYE76_053863, gene-QYE76_054104, gene-QYE76_054245, gene-QYE76_054458, gene-QYE76_054892, gene-QYE76_057494, gene-QYE76_058073, gene-QYE76_058659, gene-QYE76_059024, gene-QYE76_061824, gene-QYE76_062602, gene-QYE76_063035, gene-QYE76_063150, gene-QYE76_063167, gene-QYE76_063676, gene-QYE76_063966, gene-QYE76_064840, gene-QYE76_066163, gene-QYE76_066316, gene-QYE76_066368, gene-QYE76_066688, gene-QYE76_067064, gene-QYE76_068747, gene-QYE76_068816, gene-QYE76_070419, gene-QYE76_070547, gene-QYE76_070986, gene-QYE76_071436, gene-QYE76_071835
Poaceae	Oryza coarctata	3	Oco01G005280, Oco09G008270, Oco12G013990
Poaceae	Oryza sativa	1	LOC_Os05g09290.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G135400, gene-BS78_02G191200, gene-BS78_K124400 ... gene-BS78_03G390500, gene-BS78_05G079900, gene-BS78_10G170100
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0405064, Pt_Chr0500813, Pt_Chr0603908
Poaceae	Sporobolus alterniflorus	32	Chr01G011930, Chr01G038250, Chr02G023250, Chr03G007700 ... Chr03G019430, Chr04G008500, Chr04G016780, Chr04G026600, Chr06G008770, Chr06G025090, Chr06G032360, Chr08G010290, Chr10G002020, Chr10G002930, Chr10G002940, Chr10G006850, Chr10G006860, Chr10G008930, Chr10G010930, Chr12G028820, Chr13G011540, Chr13G015040, Chr13G016860, Chr13G017920, Chr13G017930, Chr15G015930, Chr17G012510, Chr19G010460, Chr22G015900, Chr23G013570, Chr24G010790, Chr31G003480
Poaceae	Thinopyrum elongatum	4	Tel1E01G721200, Telscf39201G000300, Telscf39201G000400 ... Telscf55501G000100
Poaceae	Triticum dicoccoides	33	gene_TRIDC1AG020000, gene_TRIDC1AG031370 ... gene_TRIDC1BG064730, gene_TRIDC2AG004760, gene_TRIDC2AG011880, gene_TRIDC2AG032600, gene_TRIDC2BG060390, gene_TRIDC2BG072730, gene_TRIDC2BG082990, gene_TRIDC3AG031740, gene_TRIDC3AG060520, gene_TRIDC3BG017410, gene_TRIDC3BG041950, gene_TRIDC3BG071650, gene_TRIDC4AG035430, gene_TRIDC4AG048400, gene_TRIDC4BG000810, gene_TRIDC4BG028600, gene_TRIDC4BG031700, gene_TRIDC5AG013060, gene_TRIDC5AG066570, gene_TRIDC5BG040310, gene_TRIDC5BG053650, gene_TRIDC5BG064590, gene_TRIDC5BG077900, gene_TRIDC6AG033530, gene_TRIDC6AG039440, gene_TRIDC6AG039750, gene_TRIDC6AG057070, gene_TRIDC7AG031000, gene_TRIDC7AG038330, gene_TRIDC7BG008290, gene_TRIDC7BG074110
Poaceae	Zea mays	1	Zm00001eb412390_P001
Poaceae	Zoysia japonica	1	nbis-gene-41975
Poaceae	Zoysia macrostachya	1	Zma_g3435
Portulacaceae	Portulaca oleracea	2	evm.TU.LG02.2559, evm.TU.LG15.42
Solanaceae	Lycium barbarum	13	gene-LOC132606769, gene-LOC132608125, gene-LOC132609208 ... gene-LOC132613242, gene-LOC132619574, gene-LOC132624563, gene-LOC132631128, gene-LOC132631219, gene-LOC132634159, gene-LOC132636734, gene-LOC132639600, gene-LOC132644548, gene-LOC132644551
Solanaceae	Solanum chilense	3	SOLCI001542700, SOLCI004498500, SOLCI006849400
Tamaricaceae	Reaumuria soongarica	1	STRG.10526_chr07_+
Tamaricaceae	Tamarix chinensis	1	TC02G2363