Basic Information
Locus ID:
Lb4G24694
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 148944528 | 148947749 | + | Lb4G24694 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 84,186.26 Da | 58.64 | 70.07 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 398 | 433 | 6.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 444 | 476 | 0.0015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 296 | 330 | 9.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 296 | 330 | 9.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 398 | 433 | 6.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 444 | 476 | 0.0015 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 293 | 616 | 1.16E-44 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 293 | 616 | 1.16E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 544 | 718 | 5.1E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 351 | 543 | 3.1E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 244 | 346 | 5.2E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 544 | 718 | 5.1E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 351 | 543 | 3.1E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 244 | 346 | 5.2E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 396 | 434 | 1.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 287 | 330 | 3.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 287 | 330 | 3.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 396 | 434 | 1.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 538 | 574 | 8.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 479 | 517 | 4.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 575 | 616 | 3.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 437 | 476 | 4.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 575 | 616 | 3.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 538 | 574 | 8.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 437 | 476 | 4.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 479 | 517 | 4.6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 443 | 485 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 298 | 331 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 403 | 435 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 403 | 435 | 9.520146 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 443 | 478 | 10.07378 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 403 | 435 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 443 | 478 | 10.07378 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 403 | 435 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 298 | 331 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 443 | 485 | 12.279615 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 317 | 331 | 5.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 421 | 435 | 5.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 463 | 477 | 5.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 421 | 435 | 5.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 317 | 331 | 5.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 463 | 477 | 5.8E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 175 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42010.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010676850.1 | uncharacterized WD repeat-containing protein C3H5.08c isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S0R733 | WD repeat-containing 44-like OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A111665 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology