Basic Information
Locus ID:
Lb4G24654
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 147914337 | 147924619 | - | Lb4G24654 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 113,878.38 Da | 57.23 | 76.67 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 794 | 853 | 1.7E-4 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 262 | 372 | 4.0E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 794 | 853 | 1.7E-4 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 262 | 372 | 4.0E-7 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 140 | 396 | 1.14E-20 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 916 | 989 | 8.1E-10 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 789 | 853 | 1.34E-9 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 789 | 853 | 1.34E-9 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 916 | 989 | 8.1E-10 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 140 | 396 | 1.14E-20 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 141 | 402 | 8.6E-26 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 786 | 864 | 1.2E-7 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 141 | 402 | 8.6E-26 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 786 | 864 | 1.2E-7 | - |
| SMART | SM00358 | DRBM_3 | 790 | 854 | 1.1E-8 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 917 | 984 | 0.077 | IPR014720 |
| SMART | SM00577 | forpap2 | 205 | 381 | 3.1E-12 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 917 | 984 | 0.077 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 790 | 854 | 1.1E-8 | IPR014720 |
| SMART | SM00577 | forpap2 | 205 | 381 | 3.1E-12 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 146 | 394 | 16.42305 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 146 | 394 | 16.42305 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 789 | 855 | 12.984985 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 789 | 855 | 12.984985 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 725 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 992 | 1034 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 609 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 878 | 893 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 759 | 777 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 586 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 878 | 909 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 787 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 725 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 609 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 878 | 893 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 787 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 759 | 777 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 586 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 992 | 1034 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 878 | 909 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_021293630.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Herrania umbratica] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZZN2 | protein-serine/threonine phosphatase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology