Basic Information
Locus ID:
Lb4G24643
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 146997979 | 147012345 | + | Lb4G24643 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 111,933.10 Da | 48.09 | 72.19 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 416 | 669 | 4.69613E-42 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 416 | 669 | 4.69613E-42 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 600 | 663 | 1.9E-6 | IPR000330 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 772 | 808 | 5.8E-6 | IPR018957 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 432 | 563 | 6.7E-20 | IPR000330 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 432 | 563 | 6.7E-20 | IPR000330 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 772 | 808 | 5.8E-6 | IPR018957 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 600 | 663 | 1.9E-6 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 686 | 977 | 1.82E-12 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 767 | 817 | 1.04E-9 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 400 | 664 | 1.6E-22 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 400 | 664 | 1.6E-22 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 686 | 977 | 1.82E-12 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 767 | 817 | 1.04E-9 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 844 | 982 | 5.8E-10 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 844 | 982 | 5.8E-10 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 384 | 482 | 3.0E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 493 | 687 | 4.1E-16 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 493 | 687 | 4.1E-16 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 384 | 482 | 3.0E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 767 | 825 | 2.7E-9 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 767 | 825 | 2.7E-9 | IPR013083 |
| SMART | SM00487 | ultradead3 | 412 | 660 | 1.2E-8 | IPR014001 |
| SMART | SM00487 | ultradead3 | 412 | 660 | 1.2E-8 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 772 | 811 | 10.763177 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 772 | 811 | 10.763177 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 787 | 796 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 787 | 796 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 57 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_034698920.1 | helicase-like transcription factor CHR28 [Vitis riparia] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | F6GZ87 | Helicase-like transcription factor CHR28 OS=Vitis vinifera OX=29760 GN=VIT_10s0116g00700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology