HalophFGD

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Basic Information
Locus ID: Lb4G24640
Species & Taxonomic ID: Limonium bicolor & 293754
Genome Assembly: GCA_023374045.1
Description: May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
Chromosome Start End Strand ID
chr04 146860092 146866245 + Lb4G24640
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.89 83,283.02 Da 43.55 80.08 -0.41
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd00200 WD40 6 251 7.98928E-63 -
CDD cd00200 WD40 6 251 7.98928E-63 -
Pfam PF00400 WD domain, G-beta repeat 11 43 0.028 IPR001680
Pfam PF00400 WD domain, G-beta repeat 91 127 6.7E-8 IPR001680
Pfam PF00400 WD domain, G-beta repeat 133 169 4.4E-9 IPR001680
Pfam PF00400 WD domain, G-beta repeat 225 250 0.1 IPR001680
Pfam PF00400 WD domain, G-beta repeat 11 43 0.028 IPR001680
Pfam PF00400 WD domain, G-beta repeat 173 210 7.5E-6 IPR001680
Pfam PF00400 WD domain, G-beta repeat 173 210 7.5E-6 IPR001680
Pfam PF13925 con80 domain of Katanin 611 748 1.2E-43 IPR028021
Pfam PF00400 WD domain, G-beta repeat 50 85 7.4E-4 IPR001680
Pfam PF00400 WD domain, G-beta repeat 225 250 0.1 IPR001680
Pfam PF00400 WD domain, G-beta repeat 50 85 7.4E-4 IPR001680
Pfam PF00400 WD domain, G-beta repeat 133 169 4.4E-9 IPR001680
Pfam PF00400 WD domain, G-beta repeat 91 127 6.7E-8 IPR001680
Pfam PF13925 con80 domain of Katanin 611 748 1.2E-43 IPR028021
SUPERFAMILY SSF50978 WD40 repeat-like 6 291 1.7E-69 IPR036322
SUPERFAMILY SSF50978 WD40 repeat-like 6 291 1.7E-69 IPR036322
Gene3D G3DSA:2.130.10.10 - 138 380 3.7E-34 IPR015943
Gene3D G3DSA:2.130.10.10 - 138 380 3.7E-34 IPR015943
Gene3D G3DSA:2.130.10.10 - 2 137 2.9E-33 IPR015943
Gene3D G3DSA:2.130.10.10 - 2 137 2.9E-33 IPR015943
SMART SM00320 WD40_4 46 85 4.5E-5 IPR001680
SMART SM00320 WD40_4 88 127 1.4E-9 IPR001680
SMART SM00320 WD40_4 213 251 0.38 IPR001680
SMART SM00320 WD40_4 172 210 7.6E-10 IPR001680
SMART SM00320 WD40_4 88 127 1.4E-9 IPR001680
SMART SM00320 WD40_4 213 251 0.38 IPR001680
SMART SM00320 WD40_4 3 43 0.0015 IPR001680
SMART SM00320 WD40_4 130 169 1.2E-9 IPR001680
SMART SM00320 WD40_4 3 43 0.0015 IPR001680
SMART SM00320 WD40_4 172 210 7.6E-10 IPR001680
SMART SM00320 WD40_4 130 169 1.2E-9 IPR001680
SMART SM00320 WD40_4 46 85 4.5E-5 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 10 52 10.207686 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 178 213 11.286501 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 137 178 16.824492 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 53 94 10.284687 -
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 95 129 12.314676 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 95 136 15.654854 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 53 94 14.017362 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 10 52 10.207686 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 53 94 14.017362 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 53 94 10.284687 -
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 137 174 12.894674 -
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 95 129 12.314676 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 137 178 16.824492 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 178 213 11.286501 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 178 219 14.117617 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 178 219 14.117617 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 137 174 12.894674 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 95 136 15.654854 IPR001680
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 156 170 - IPR019775
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 197 211 - IPR019775
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 156 170 - IPR019775
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 197 211 - IPR019775
PRINTS PR00320 G protein beta WD-40 repeat signature 156 170 1.0E-7 IPR020472
PRINTS PR00320 G protein beta WD-40 repeat signature 156 170 1.0E-7 IPR020472
PRINTS PR00320 G protein beta WD-40 repeat signature 197 211 1.0E-7 IPR020472
PRINTS PR00320 G protein beta WD-40 repeat signature 114 128 1.0E-7 IPR020472
PRINTS PR00320 G protein beta WD-40 repeat signature 114 128 1.0E-7 IPR020472
PRINTS PR00320 G protein beta WD-40 repeat signature 197 211 1.0E-7 IPR020472
Hamap MF_03022 Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. 1 751 17.869822 IPR026962
Hamap MF_03022 Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. 1 751 17.869822 IPR026962
MobiDBLite mobidb-lite consensus disorder prediction 419 490 - -
MobiDBLite mobidb-lite consensus disorder prediction 321 339 - -
MobiDBLite mobidb-lite consensus disorder prediction 308 345 - -
MobiDBLite mobidb-lite consensus disorder prediction 308 345 - -
MobiDBLite mobidb-lite consensus disorder prediction 358 395 - -
MobiDBLite mobidb-lite consensus disorder prediction 358 395 - -
MobiDBLite mobidb-lite consensus disorder prediction 432 478 - -
MobiDBLite mobidb-lite consensus disorder prediction 358 375 - -
MobiDBLite mobidb-lite consensus disorder prediction 432 478 - -
MobiDBLite mobidb-lite consensus disorder prediction 321 339 - -
MobiDBLite mobidb-lite consensus disorder prediction 358 375 - -
MobiDBLite mobidb-lite consensus disorder prediction 419 490 - -
Gene Ontology
Biological Process:
GO:0051013 (microtubule severing)
Molecular Function:
GO:0005515 (protein binding) GO:0008017 (microtubule binding)
Cellular Component:
GO:0008352 (katanin complex)
KEGG Pathway
KO Term:
K18643 (katanin p80 WD40 repeat-containing subunit B1)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G61210.3 - 0
RefSeq XP_021726378.1 katanin p80 WD40 repeat-containing subunit B1 homolog isoform X3 [Chenopodium quinoa] 0
Swiss-Prot F4KB17 Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 0
TrEMBL A0A6A4LX70 Katanin_con80 domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_06271 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 3 jg20304, jg22035, jg5079
Aizoaceae Mesembryanthemum crystallinum 2 gene_22289, gene_25334
Amaranthaceae Atriplex hortensis 4 Ah017931, Ah024700, Ah038645, Ah038646
Amaranthaceae Beta vulgaris 1 BVRB_9g202260
Amaranthaceae Salicornia bigelovii 4 Sbi_jg10176, Sbi_jg14659, Sbi_jg26388, Sbi_jg55416
Amaranthaceae Salicornia europaea 2 Seu_jg22253, Seu_jg25981
Amaranthaceae Suaeda aralocaspica 2 GOSA_00014013, GOSA_00023970
Amaranthaceae Suaeda glauca 6 Sgl45799, Sgl45800, Sgl45839, Sgl50534, Sgl78017, Sgl80522
Amaranthaceae Chenopodium album 7 gene:ENSEOMG00000009427, gene:ENSEOMG00000011078 ...
gene:ENSEOMG00000027532, gene:ENSEOMG00000031772, gene:ENSEOMG00000035988, gene:ENSEOMG00000041313, gene:ENSEOMG00000044088
Amaranthaceae Chenopodium quinoa 5 CQ.Regalona.r1.2AG0005330, CQ.Regalona.r1.4AG0017400 ...
CQ.Regalona.r1.4BG0017810, CQ.Regalona.r1.8AG0004330, CQ.Regalona.r1.8BG0004650
Anacardiaceae Pistacia vera 2 pistato.v30092450, pistato.v30212810
Apiaceae Apium graveolens 2 Ag5G01879, Ag8G01941
Arecaceae Cocos nucifera 4 COCNU_08G009940, COCNU_09G006950, COCNU_14G006400 ...
scaffold000040G000080
Arecaceae Phoenix dactylifera 4 gene-LOC103696578, gene-LOC103698051, gene-LOC103714616 ...
gene-LOC103716371
Asparagaceae Asparagus officinalis 2 AsparagusV1_03.2222.V1.1, AsparagusV1_07.2138.V1.1
Asteraceae Flaveria trinervia 3 Ftri13G03933, Ftri15G01385, Ftri5G14987
Brassicaceae Arabidopsis thaliana 4 AT1G11160.1, AT1G61210.1, AT5G08390.1, AT5G23430.1
Brassicaceae Eutrema salsugineum 4 Thhalv10005394m.g.v1.0, Thhalv10006699m.g.v1.0 ...
Thhalv10012683m.g.v1.0, Thhalv10023227m.g.v1.0
Brassicaceae Schrenkiella parvula 4 Sp1g09830.v2.2, Sp2g03270.v2.2, Sp2g23730.v2.2 ...
Sp6g34550.v2.2
Brassicaceae Brassica nigra 5 BniB02g006050.2N, BniB02g076620.2N, BniB07g040740.2N ...
BniB07g047230.2N, BniB08g003770.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq01G2447, Ceq03G1985
Casuarinaceae Casuarina glauca 2 Cgl01G2704, Cgl03G2131
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno13g00050, gene.Cymno14g02460
Dunaliellaceae Dunaliella salina 1 Dusal.0028s00016.v1.0
Hydrocharitaceae Thalassia testudinum 4 gene.Thate03g12440, gene.Thate05g28660, gene.Thate07g10040 ...
gene.Thate08g00910
Malvaceae Hibiscus hamabo Siebold & Zucc. 3 nbisL1-mrna-11052, nbisL1-mrna-3850, nbisL1-mrna-9404
Nitrariaceae Nitraria sibirica 2 evm.TU.LG03.1584, evm.TU.LG12.1006
Plantaginaceae Plantago ovata 2 Pov_00005719, Pov_00027678
Plumbaginaceae Limonium bicolor 5 Lb2G15301, Lb3G20755, Lb4G24638, Lb4G24640, Lb6G30412
Poaceae Echinochloa crus-galli 10 AH01.1718, AH02.3487, AH09.2712, BH01.1919, BH02.3470 ...
BH02.3505, BH09.2952, CH01.2180, CH02.3010, CH09.3250
Poaceae Eleusine coracana subsp. coracana 5 gene-QOZ80_1AG0035730, gene-QOZ80_1BG0085760 ...
gene-QOZ80_2AG0112260, gene-QOZ80_4AG0299350, gene-QOZ80_4BG0330040
Poaceae Hordeum vulgare 3 HORVU.MOREX.r3.1HG0045950.1, HORVU.MOREX.r3.2HG0209810.1 ...
HORVU.MOREX.r3.3HG0293550.1
Poaceae Lolium multiflorum 3 gene-QYE76_011771, gene-QYE76_047525, gene-QYE76_056127
Poaceae Oryza coarctata 6 Oco01G021880, Oco02G022450, Oco07G019300, Oco08G018570 ...
Oco19G006970, Oco20G006920
Poaceae Oryza sativa 4 LOC_Os01g34680.1, LOC_Os01g57210.1, LOC_Os04g58130.1 ...
LOC_Os10g35200.1
Poaceae Paspalum vaginatum 3 gene-BS78_01G189600, gene-BS78_03G296900 ...
gene-BS78_06G284100
Poaceae Puccinellia tenuiflora 5 Pt_Chr0300098, Pt_Chr0300135, Pt_Chr0502734, Pt_Chr0502789 ...
Pt_Chr0601626
Poaceae Sporobolus alterniflorus 9 Chr02G007960, Chr03G017620, Chr05G025550, Chr08G024140 ...
Chr15G021670, Chr23G000850, Chr25G000650, Chr26G018430, Chr30G000690
Poaceae Thinopyrum elongatum 3 Tel1E01G300100, Tel2E01G962200, Tel3E01G512000
Poaceae Triticum dicoccoides 6 gene_TRIDC1AG025210, gene_TRIDC1BG030250 ...
gene_TRIDC2AG077500, gene_TRIDC2BG085680, gene_TRIDC3AG046170, gene_TRIDC3BG052490
Poaceae Triticum aestivum 10 TraesCS1A02G164300.1, TraesCS1B02G181100.1 ...
TraesCS1D02G151100.1, TraesCS1D02G161300.1, TraesCS2A02G592600.1, TraesCS2B02G591600.2, TraesCS2D02G561900.1, TraesCS3A02G317500.1, TraesCS3B02G349000.2, TraesCS3D02G313800.1
Poaceae Zea mays 5 Zm00001eb044790_P002, Zm00001eb066150_P001 ...
Zm00001eb283500_P001, Zm00001eb369860_P004, Zm00001eb433770_P001
Poaceae Zoysia japonica 3 nbis-gene-11745, nbis-gene-23209, nbis-gene-6199
Poaceae Zoysia macrostachya 4 Zma_g11280, Zma_g20696, Zma_g22228, Zma_g8778
Portulacaceae Portulaca oleracea 6 evm.TU.LG01.1606, evm.TU.LG01.1668, evm.TU.LG02.2342 ...
evm.TU.LG14.854, evm.TU.LG14.894, evm.TU.LG23.577
Posidoniaceae Posidonia oceanica 2 gene.Posoc06g04090, gene.Posoc10g00150
Rhizophoraceae Bruguiera sexangula 3 evm.TU.60431.1, evm.TU.60432.1, evm.TU.Scaffold_15_RagTag.2
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-23809, nbisL1-mrna-26286
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-12115, nbisL1-mrna-9155
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-17357, nbisL1-mrna-21620
Rhizophoraceae Kandelia candel 2 evm.TU.utg000001l.1, evm.TU.utg000027l.100
Rhizophoraceae Kandelia obovata 2 Maker00004589, Maker00017476
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-10653, nbisL1-mrna-11719
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-23919, nbisL1-mrna-2922
Salicaceae Populus euphratica 3 populus_peu05933, populus_peu18245, populus_peu19797
Solanaceae Lycium barbarum 3 gene-LOC132613553, gene-LOC132621242, gene-LOC132621419
Solanaceae Solanum chilense 3 SOLCI001186500, SOLCI004632600, SOLCI006635800
Solanaceae Solanum pennellii 3 gene-LOC107011271, gene-LOC107011518, gene-LOC107015576
Tamaricaceae Reaumuria soongarica 2 STRG.8204_chr05_-, gene_16689
Tamaricaceae Tamarix chinensis 2 TC01G2388, TC07G1248
Zosteraceae Zostera marina 2 Zosma01g35090.v3.1, Zosma03g28400.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.