halophFGD

Basic Information

Locus ID: Lb4G24638

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr04	146740801	146762751	-	Lb4G24638

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.11	79,049.87 Da	45.32	80.98	-0.39

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	3	252	2.14718E-63	-
CDD	cd00200	WD40	3	252	2.14718E-63	-
Pfam	PF00400	WD domain, G-beta repeat	92	128	6.3E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	174	211	6.9E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	51	86	7.0E-4	IPR001680
Pfam	PF13925	con80 domain of Katanin	605	708	2.7E-30	IPR028021
Pfam	PF13925	con80 domain of Katanin	605	708	2.7E-30	IPR028021
Pfam	PF00400	WD domain, G-beta repeat	226	251	0.094	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	6	44	0.0036	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	134	170	4.1E-9	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	174	211	6.9E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	51	86	7.0E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	92	128	6.3E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	6	44	0.0036	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	134	170	4.1E-9	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	226	251	0.094	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	6	292	5.86E-70	IPR036322
SUPERFAMILY	SSF50978	WD40 repeat-like	6	292	5.86E-70	IPR036322
Gene3D	G3DSA:2.130.10.10	-	139	373	3.4E-34	IPR015943
Gene3D	G3DSA:2.130.10.10	-	2	138	8.3E-35	IPR015943
Gene3D	G3DSA:2.130.10.10	-	2	138	8.3E-35	IPR015943
Gene3D	G3DSA:2.130.10.10	-	139	373	3.4E-34	IPR015943
SMART	SM00320	WD40_4	131	170	1.2E-9	IPR001680
SMART	SM00320	WD40_4	47	86	4.5E-5	IPR001680
SMART	SM00320	WD40_4	89	128	1.4E-9	IPR001680
SMART	SM00320	WD40_4	173	211	9.1E-10	IPR001680
SMART	SM00320	WD40_4	4	44	1.6E-4	IPR001680
SMART	SM00320	WD40_4	47	86	4.5E-5	IPR001680
SMART	SM00320	WD40_4	214	252	0.38	IPR001680
SMART	SM00320	WD40_4	4	44	1.6E-4	IPR001680
SMART	SM00320	WD40_4	214	252	0.38	IPR001680
SMART	SM00320	WD40_4	173	211	9.1E-10	IPR001680
SMART	SM00320	WD40_4	131	170	1.2E-9	IPR001680
SMART	SM00320	WD40_4	89	128	1.4E-9	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	11	53	10.408196	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	54	95	14.017362	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	54	95	10.284687	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	96	137	15.654854	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	179	214	11.233774	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	179	220	14.05078	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	54	95	14.017362	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	96	130	12.314676	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	179	214	11.233774	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	138	179	16.824492	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	54	95	10.284687	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	138	175	12.894674	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	179	220	14.05078	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	96	137	15.654854	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	138	175	12.894674	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	138	179	16.824492	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	96	130	12.314676	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	11	53	10.408196	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	157	171	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	157	171	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	198	212	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	198	212	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	198	212	9.1E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	115	129	9.1E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	157	171	9.1E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	115	129	9.1E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	157	171	9.1E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	198	212	9.1E-8	IPR020472
Hamap	MF_03022	Katanin p80 WD40 repeat-containing subunit B1 [KATNB1].	1	714	16.670822	IPR026962
Hamap	MF_03022	Katanin p80 WD40 repeat-containing subunit B1 [KATNB1].	1	714	16.670822	IPR026962
MobiDBLite	mobidb-lite	consensus disorder prediction	362	389	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	413	484	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	322	340	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	322	340	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	426	472	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	362	389	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	426	472	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	309	347	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	413	484	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	309	347	-	-

Gene Ontology

Biological Process:

GO:0051013 (microtubule severing)

Molecular Function:

GO:0005515 (protein binding) GO:0008017 (microtubule binding)

Cellular Component:

GO:0008352 (katanin complex)

KEGG Pathway

KO Term:

K18643 (katanin p80 WD40 repeat-containing subunit B1)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G08390.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_021726378.1	katanin p80 WD40 repeat-containing subunit B1 homolog isoform X3 [Chenopodium quinoa]
Swiss-Prot	F4KB17	Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1
TrEMBL	A0A484MN99	Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS31304 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg20304, jg22035, jg5079
Aizoaceae	Mesembryanthemum crystallinum	2	gene_22289, gene_25334
Amaranthaceae	Atriplex hortensis	4	Ah017931, Ah024700, Ah038645, Ah038646
Amaranthaceae	Beta vulgaris	1	BVRB_9g202260
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg10176, Sbi_jg14659, Sbi_jg26388, Sbi_jg55416
Amaranthaceae	Salicornia europaea	2	Seu_jg22253, Seu_jg25981
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00014013, GOSA_00023970
Amaranthaceae	Suaeda glauca	6	Sgl45799, Sgl45800, Sgl45839, Sgl50534, Sgl78017, Sgl80522
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000009427, gene:ENSEOMG00000011078 ... gene:ENSEOMG00000027532, gene:ENSEOMG00000031772, gene:ENSEOMG00000035988, gene:ENSEOMG00000041313, gene:ENSEOMG00000044088
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.2AG0005330, CQ.Regalona.r1.4AG0017400 ... CQ.Regalona.r1.4BG0017810, CQ.Regalona.r1.8AG0004330, CQ.Regalona.r1.8BG0004650
Anacardiaceae	Pistacia vera	2	pistato.v30092450, pistato.v30212810
Apiaceae	Apium graveolens	2	Ag5G01879, Ag8G01941
Arecaceae	Cocos nucifera	4	COCNU_08G009940, COCNU_09G006950, COCNU_14G006400 ... scaffold000040G000080
Arecaceae	Phoenix dactylifera	4	gene-LOC103696578, gene-LOC103698051, gene-LOC103714616 ... gene-LOC103716371
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.2222.V1.1, AsparagusV1_07.2138.V1.1
Asteraceae	Flaveria trinervia	3	Ftri13G03933, Ftri15G01385, Ftri5G14987
Brassicaceae	Arabidopsis thaliana	4	AT1G11160.1, AT1G61210.1, AT5G08390.1, AT5G23430.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10005394m.g.v1.0, Thhalv10006699m.g.v1.0 ... Thhalv10012683m.g.v1.0, Thhalv10023227m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g09830.v2.2, Sp2g03270.v2.2, Sp2g23730.v2.2 ... Sp6g34550.v2.2
Brassicaceae	Brassica nigra	5	BniB02g006050.2N, BniB02g076620.2N, BniB07g040740.2N ... BniB07g047230.2N, BniB08g003770.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G2447, Ceq03G1985
Casuarinaceae	Casuarina glauca	2	Cgl01G2704, Cgl03G2131
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno13g00050, gene.Cymno14g02460
Dunaliellaceae	Dunaliella salina	1	Dusal.0028s00016.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate03g12440, gene.Thate05g28660, gene.Thate07g10040 ... gene.Thate08g00910
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-11052, nbisL1-mrna-3850, nbisL1-mrna-9404
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.1584, evm.TU.LG12.1006
Plantaginaceae	Plantago ovata	2	Pov_00005719, Pov_00027678
Plumbaginaceae	Limonium bicolor	5	Lb2G15301, Lb3G20755, Lb4G24638, Lb4G24640, Lb6G30412
Poaceae	Echinochloa crus-galli	10	AH01.1718, AH02.3487, AH09.2712, BH01.1919, BH02.3470 ... BH02.3505, BH09.2952, CH01.2180, CH02.3010, CH09.3250
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_1AG0035730, gene-QOZ80_1BG0085760 ... gene-QOZ80_2AG0112260, gene-QOZ80_4AG0299350, gene-QOZ80_4BG0330040
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0045950.1, HORVU.MOREX.r3.2HG0209810.1 ... HORVU.MOREX.r3.3HG0293550.1
Poaceae	Lolium multiflorum	3	gene-QYE76_011771, gene-QYE76_047525, gene-QYE76_056127
Poaceae	Oryza coarctata	6	Oco01G021880, Oco02G022450, Oco07G019300, Oco08G018570 ... Oco19G006970, Oco20G006920
Poaceae	Oryza sativa	4	LOC_Os01g34680.1, LOC_Os01g57210.1, LOC_Os04g58130.1 ... LOC_Os10g35200.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G189600, gene-BS78_03G296900 ... gene-BS78_06G284100
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0300098, Pt_Chr0300135, Pt_Chr0502734, Pt_Chr0502789 ... Pt_Chr0601626
Poaceae	Sporobolus alterniflorus	9	Chr02G007960, Chr03G017620, Chr05G025550, Chr08G024140 ... Chr15G021670, Chr23G000850, Chr25G000650, Chr26G018430, Chr30G000690
Poaceae	Thinopyrum elongatum	3	Tel1E01G300100, Tel2E01G962200, Tel3E01G512000
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG025210, gene_TRIDC1BG030250 ... gene_TRIDC2AG077500, gene_TRIDC2BG085680, gene_TRIDC3AG046170, gene_TRIDC3BG052490
Poaceae	Triticum aestivum	10	TraesCS1A02G164300.1, TraesCS1B02G181100.1 ... TraesCS1D02G151100.1, TraesCS1D02G161300.1, TraesCS2A02G592600.1, TraesCS2B02G591600.2, TraesCS2D02G561900.1, TraesCS3A02G317500.1, TraesCS3B02G349000.2, TraesCS3D02G313800.1
Poaceae	Zea mays	5	Zm00001eb044790_P002, Zm00001eb066150_P001 ... Zm00001eb283500_P001, Zm00001eb369860_P004, Zm00001eb433770_P001
Poaceae	Zoysia japonica	3	nbis-gene-11745, nbis-gene-23209, nbis-gene-6199
Poaceae	Zoysia macrostachya	4	Zma_g11280, Zma_g20696, Zma_g22228, Zma_g8778
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.1606, evm.TU.LG01.1668, evm.TU.LG02.2342 ... evm.TU.LG14.854, evm.TU.LG14.894, evm.TU.LG23.577
Posidoniaceae	Posidonia oceanica	2	gene.Posoc06g04090, gene.Posoc10g00150
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60431.1, evm.TU.60432.1, evm.TU.Scaffold_15_RagTag.2
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-23809, nbisL1-mrna-26286
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-12115, nbisL1-mrna-9155
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-17357, nbisL1-mrna-21620
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000001l.1, evm.TU.utg000027l.100
Rhizophoraceae	Kandelia obovata	2	Maker00004589, Maker00017476
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-10653, nbisL1-mrna-11719
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-23919, nbisL1-mrna-2922
Salicaceae	Populus euphratica	3	populus_peu05933, populus_peu18245, populus_peu19797
Solanaceae	Lycium barbarum	3	gene-LOC132613553, gene-LOC132621242, gene-LOC132621419
Solanaceae	Solanum chilense	3	SOLCI001186500, SOLCI004632600, SOLCI006635800
Solanaceae	Solanum pennellii	3	gene-LOC107011271, gene-LOC107011518, gene-LOC107015576
Tamaricaceae	Reaumuria soongarica	2	STRG.8204_chr05_-, gene_16689
Tamaricaceae	Tamarix chinensis	2	TC01G2388, TC07G1248
Zosteraceae	Zostera marina	2	Zosma01g35090.v3.1, Zosma03g28400.v3.1