halophFGD

Basic Information

Locus ID: Lb4G24604

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr04	144511556	144529306	+	Lb4G24604

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.29	46,802.45 Da	37.43	84.42	-0.37

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	145	399	6.5867E-54	-
CDD	cd00200	WD40	145	399	6.5867E-54	-
Pfam	PF00400	WD domain, G-beta repeat	362	399	1.2E-9	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	318	357	7.2E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	275	312	3.8E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	230	268	1.1E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	362	399	1.2E-9	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	318	357	7.2E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	230	268	1.1E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	275	312	3.8E-5	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	152	401	5.34E-64	IPR036322
SUPERFAMILY	SSF50978	WD40 repeat-like	152	401	5.34E-64	IPR036322
Gene3D	G3DSA:2.130.10.10	-	148	419	1.1E-91	IPR015943
Gene3D	G3DSA:2.130.10.10	-	148	419	1.1E-91	IPR015943
SMART	SM00320	WD40_4	316	357	1.4E-6	IPR001680
SMART	SM00320	WD40_4	227	268	1.8E-7	IPR001680
SMART	SM00320	WD40_4	142	181	12.0	IPR001680
SMART	SM00320	WD40_4	184	223	1.6	IPR001680
SMART	SM00320	WD40_4	360	399	6.4E-11	IPR001680
SMART	SM00320	WD40_4	316	357	1.4E-6	IPR001680
SMART	SM00320	WD40_4	272	312	1.6E-10	IPR001680
SMART	SM00320	WD40_4	360	399	6.4E-11	IPR001680
SMART	SM00320	WD40_4	142	181	12.0	IPR001680
SMART	SM00320	WD40_4	184	223	1.6	IPR001680
SMART	SM00320	WD40_4	227	268	1.8E-7	IPR001680
SMART	SM00320	WD40_4	272	312	1.6E-10	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	279	312	11.523771	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	323	366	12.914561	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	367	399	15.086744	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	279	321	14.819399	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	234	270	9.441055	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	367	399	15.086744	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	234	270	9.441055	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	279	312	11.523771	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	367	399	12.446495	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	323	366	12.914561	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	367	399	12.446495	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	279	321	14.819399	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	323	360	9.572873	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	234	270	11.277069	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	323	360	9.572873	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	234	270	11.277069	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	255	269	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	344	358	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	344	358	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	255	269	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	344	358	3.8E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	255	269	3.8E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	386	400	3.8E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	386	400	3.8E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	344	358	3.8E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	255	269	3.8E-9	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	11	32	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	64	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	11	32	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	64	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K17302 (coatomer subunit beta')

Best hit

Source	Best Hit ID	Description
TAIR	AT1G52360.3	-
RefSeq	XP_030925466.1	coatomer subunit beta'-1-like [Quercus lobata]
Swiss-Prot	Q9C827	Coatomer subunit beta'-2 OS=Arabidopsis thaliana OX=3702 GN=At1g52360 PE=1 SV=1
TrEMBL	A0A1R3G7W2	WD_REPEATS_REGION domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_28026 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg13528, jg25369, jg27197
Aizoaceae	Mesembryanthemum crystallinum	2	gene_26151, gene_26152
Amaranthaceae	Atriplex hortensis	3	Ah010724, Ah011445, Ah011446
Amaranthaceae	Beta vulgaris	1	BVRB_9g220570
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg11437, Sbi_jg46395
Amaranthaceae	Salicornia europaea	1	Seu_jg20716
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00005264, GOSA_00009274
Amaranthaceae	Suaeda glauca	5	Sgl43451, Sgl55890, Sgl61080, Sgl62060, Sgl66622
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000016355, gene:ENSEOMG00000019314 ... gene:ENSEOMG00000039774, gene:ENSEOMG00000051718
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7BG0010840, CQ.Regalona.r1.9AG0010770 ... CQ.Regalona.r1.9AG0013780, CQ.Regalona.r1.9BG0011620
Anacardiaceae	Pistacia vera	2	pistato.v30125810, pistato.v30125840
Apiaceae	Apium graveolens	5	Ag2G00566, Ag2G01700, Ag4G01326, Ag5G00835, Ag6G01454
Arecaceae	Cocos nucifera	2	COCNU_02G000460, COCNU_06G000870
Arecaceae	Phoenix dactylifera	3	gene-LOC103697512, gene-LOC103704604, gene-LOC103721627
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.2026.V1.1, AsparagusV1_03.2987.V1.1
Asteraceae	Flaveria trinervia	5	Ftri18G17233, Ftri1G02389, Ftri8G19123, Ftri9G15219 ... FtriNA10366
Brassicaceae	Arabidopsis thaliana	3	AT1G52360.2, AT1G79990.1, AT3G15980.5
Brassicaceae	Eutrema salsugineum	2	Thhalv10011217m.g.v1.0, Thhalv10020009m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g38970.v2.2, Sp3g14330.v2.2, Sp5g35770.v2.2
Brassicaceae	Brassica nigra	6	BniB04g057410.2N, BniB06g028370.2N, BniB06g051770.2N ... BniB07g003500.2N, BniB07g028600.2N, BniB07g053830.2N
Casuarinaceae	Casuarina equisetifolia	7	Ceq05G0228, Ceq05G0229, Ceq05G0230, Ceq05G0231, Ceq05G0232 ... Ceq05G0233, Ceq05G0239
Casuarinaceae	Casuarina glauca	3	Cgl05G0237, Cgl05G0241, Cgl05G0244
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g11780, gene.Cymno16g00580
Dunaliellaceae	Dunaliella salina	2	Dusal.0118s00002.v1.0, Dusal.0838s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g33060, gene.Thate06g15470
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-4534
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.375
Plantaginaceae	Plantago ovata	2	Pov_00015427, Pov_00024990
Plumbaginaceae	Limonium bicolor	5	Lb0G37653, Lb3G18460, Lb4G23246, Lb4G23247, Lb4G24604
Poaceae	Echinochloa crus-galli	9	AH06.205, AH06.2172, AH07.805, BH06.307, BH07.4009, BH07.930 ... CH06.2199, CH06.292, CH07.687
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_2AG0105840, gene-QOZ80_2BG0159250 ... gene-QOZ80_4AG0326750, gene-QOZ80_6AG0508440, gene-QOZ80_6BG0460640, gene-QOZ80_6BG0497370, gene-QOZ80_9BG0700790, gene-QOZ80_9BG0714850
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.3HG0218550.1, HORVU.MOREX.r3.3HG0218560.1 ... HORVU.MOREX.r3.5HG0439780.1, HORVU.MOREX.r3.6HG0576880.1, HORVU.MOREX.r3.7HG0648880.1
Poaceae	Lolium multiflorum	11	gene-QYE76_007481, gene-QYE76_007485, gene-QYE76_007486 ... gene-QYE76_007489, gene-QYE76_021529, gene-QYE76_027804, gene-QYE76_030605, gene-QYE76_030709, gene-QYE76_036868, gene-QYE76_036875, gene-QYE76_036883
Poaceae	Oryza coarctata	5	Oco03G005560, Oco04G005610, Oco11G002140, Oco11G012010 ... Oco12G002070
Poaceae	Oryza sativa	3	LOC_Os02g11830.2, LOC_Os02g11840.1, LOC_Os06g05180.3
Poaceae	Paspalum vaginatum	3	gene-BS78_04G082100, gene-BS78_10G035400 ... gene-BS78_10G179100
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0202040, Pt_Chr0401756, Pt_Chr0401777, Pt_Chr0401778 ... Pt_Chr0401790, Pt_Chr0401796, Pt_Chr0401800, Pt_Chr0402244, Pt_Chr0501230
Poaceae	Sporobolus alterniflorus	9	Chr06G032770, Chr0G015150, Chr10G017290, Chr11G005220 ... Chr11G023120, Chr14G001600, Chr15G024130, Chr18G011980, Chr21G000720
Poaceae	Thinopyrum elongatum	8	Tel3E01G021500, Tel3E01G153000, Tel4E01G144800 ... Tel6E01G349900, Tel7E01G1011300, Tel7E01G1011500, Tel7E01G1011600, Tel7E01G187700
Poaceae	Triticum dicoccoides	20	gene_TRIDC3BG000710, gene_TRIDC3BG001890 ... gene_TRIDC3BG070490, gene_TRIDC4AG058530, gene_TRIDC4AG067370, gene_TRIDC4AG067390, gene_TRIDC4AG068050, gene_TRIDC4BG014360, gene_TRIDC5AG008480, gene_TRIDC6AG025470-100890, gene_TRIDC6AG025470-62404, gene_TRIDC6BG031740, gene_TRIDC7AG010080, gene_TRIDC7AG075100, gene_TRIDC7AG075270, gene_TRIDC7AG075460, gene_TRIDC7BG072010, gene_TRIDC7BG074000, gene_TRIDC7BG075480, gene_TRIDC7BG076690
Poaceae	Triticum aestivum	18	TraesCS1D02G434700.1, TraesCS3A02G012700.1 ... TraesCS3B02G005000.1, TraesCS3B02G015000.1, TraesCS4A02G388200.2, TraesCS4B02G092000.1, TraesCS4D02G089000.1, TraesCS5D02G502400.1, TraesCS6A02G130600.1, TraesCS6A02G179300.1, TraesCS6B02G206500.2, TraesCS6D02G165800.1, TraesCS7A02G088600.3, TraesCS7A02G541100.1, TraesCS7B02G480400.1, TraesCS7D02G083900.1, TraesCS7D02G554800.1, TraesCSU02G189400.1
Poaceae	Zea mays	10	Zm00001eb195340_P001, Zm00001eb195370_P001 ... Zm00001eb195680_P001, Zm00001eb205430_P001, Zm00001eb240380_P004, Zm00001eb265360_P001, Zm00001eb270540_P002, Zm00001eb377270_P002, Zm00001eb386030_P003, Zm00001eb424470_P001
Poaceae	Zoysia japonica	4	nbis-gene-33409, nbis-gene-34693, nbis-gene-40386 ... nbis-gene-44018
Poaceae	Zoysia macrostachya	3	Zma_g12430, Zma_g15178, Zma_g29091
Portulacaceae	Portulaca oleracea	5	evm.TU.LG06.1186, evm.TU.LG07.1711, evm.TU.LG11.541 ... evm.TU.LG15.1499, evm.TU.LG22.1135
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g24360, gene.Posoc08g15220, gene.Posoc09g11420
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60453.1, evm.TU.60454.1 ... evm.TU.Scaffold_10_RagTag.1257
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-1215, nbisL1-mrna-27857, nbisL1-mrna-6978
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10365, nbisL1-mrna-10715, nbisL1-mrna-5732
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-6425, nbisL1-mrna-6428, nbisL1-mrna-7905 ... nbisL1-mrna-8861
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000019l.762, evm.TU.utg000023l.163 ... evm.TU.utg000033l.581
Rhizophoraceae	Kandelia obovata	2	Maker00014791, Maker00018792
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16380, nbisL1-mrna-18820, nbisL1-mrna-5230 ... nbisL1-mrna-7325
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-13166, nbisL1-mrna-18017, nbisL1-mrna-21262
Salicaceae	Populus euphratica	6	populus_peu02776, populus_peu12858, populus_peu12859 ... populus_peu33693, populus_peu33724, populus_peu33725
Solanaceae	Lycium barbarum	4	gene-LOC132598458, gene-LOC132603673, gene-LOC132633342 ... gene-LOC132634354
Solanaceae	Solanum chilense	4	SOLCI001215900, SOLCI001859400, SOLCI001859500 ... SOLCI005754900
Solanaceae	Solanum pennellii	4	gene-LOC107007027, gene-LOC107014066, gene-LOC107014070 ... gene-LOC107023332
Tamaricaceae	Reaumuria soongarica	2	STRG.21280_chr09_+, gene_10084
Tamaricaceae	Tamarix chinensis	3	TC05G0223, TC08G2071, TC10G1957
Zosteraceae	Zostera marina	9	Zosma04g03500.v3.1, Zosma05g02990.v3.1, Zosma06g08730.v3.1 ... Zosma06g30830.v3.1, Zosma435g00010.v3.1, Zosma555g00010.v3.1, Zosma555g00020.v3.1, Zosma644g00010.v3.1, Zosma869g00010.v3.1