Basic Information
Locus ID:
Lb4G24381
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 130582995 | 130592136 | - | Lb4G24381 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 55,277.33 Da | 52.27 | 79.36 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 112 | 132 | 0.01 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 221 | 246 | 1.2E-5 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 178 | 208 | 0.0023 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 221 | 246 | 1.2E-5 | IPR002110 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 98 | 2.5E-14 | - |
| Pfam | PF00023 | Ankyrin repeat | 112 | 132 | 0.01 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 178 | 208 | 0.0023 | IPR002110 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 98 | 2.5E-14 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 318 | 376 | 4.5E-9 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 273 | 5.56E-48 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 318 | 376 | 4.5E-9 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 273 | 5.56E-48 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 306 | 390 | 1.6E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 5 | 137 | 6.1E-32 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 153 | 273 | 1.7E-21 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 306 | 390 | 1.6E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 5 | 137 | 6.1E-32 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 153 | 273 | 1.7E-21 | IPR036770 |
| SMART | SM00248 | ANK_2a | 177 | 206 | 0.0011 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.014 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 139 | 8.6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 220 | 252 | 7.4E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 2.0E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 220 | 252 | 7.4E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 2.0E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 139 | 8.6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 177 | 206 | 0.0011 | IPR002110 |
| SMART | SM00184 | ring_2 | 319 | 368 | 0.0072 | IPR001841 |
| SMART | SM00184 | ring_2 | 319 | 368 | 0.0072 | IPR001841 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.014 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 8.54937 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 177 | 209 | 10.15197 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 220 | 246 | 11.558956 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.90635 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.00344 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 220 | 246 | 11.59431 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 220 | 246 | 11.558956 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.787592 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.787592 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 8.985412 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 177 | 209 | 10.15197 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 177 | 206 | 9.489508 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.90635 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 177 | 206 | 9.489508 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 8.54937 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 220 | 246 | 11.59431 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 319 | 369 | 9.863244 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.00344 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 319 | 369 | 9.863244 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 8.985412 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 334 | 343 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 334 | 343 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 493 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_010693474.1 | E3 ubiquitin-protein ligase XBAT33 [Beta vulgaris subsp. vulgaris] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | D7TMU6 | RING-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_16s0100g00690 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology