Basic Information
Locus ID:
Lb4G24341
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 128009609 | 128013210 | + | Lb4G24341 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 30,094.40 Da | 49.42 | 75.42 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 154 | 209 | 8.88611E-11 | - |
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 154 | 209 | 8.88611E-11 | - |
| Pfam | PF12906 | RING-variant domain | 154 | 208 | 8.3E-9 | IPR011016 |
| Pfam | PF12906 | RING-variant domain | 154 | 208 | 8.3E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 150 | 212 | 1.8E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 150 | 212 | 1.8E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 217 | 3.6E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 217 | 3.6E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 153 | 209 | 3.9E-15 | IPR011016 |
| SMART | SM00744 | ringv_2 | 153 | 209 | 3.9E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 146 | 215 | 18.05735 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 146 | 215 | 18.05735 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_020212260.1 | uncharacterized protein LOC109796849 isoform X1 [Cajanus cajan] | 0 |
| TrEMBL | A0A2C9U9R1 | RING-CH-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_16G041700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology