Basic Information
Locus ID:
Lb4G24238
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
RDR2
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 119503207 | 119508552 | - | Lb4G24238 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 125,899.64 Da | 40.61 | 91.64 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 10 | 87 | 2.67984E-6 | - |
| CDD | cd00590 | RRM_SF | 10 | 87 | 2.67984E-6 | - |
| Pfam | PF05183 | RNA dependent RNA polymerase | 381 | 946 | 5.5E-174 | IPR007855 |
| Pfam | PF05183 | RNA dependent RNA polymerase | 381 | 946 | 5.5E-174 | IPR007855 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 8 | 101 | 5.84E-9 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 8 | 101 | 5.84E-9 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 3 | 104 | 7.7E-7 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 3 | 104 | 7.7E-7 | IPR012677 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 8 | 91 | 10.257856 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 8 | 91 | 10.257856 | IPR000504 |
| Coils | Coil | Coil | 1029 | 1049 | - | - |
| Coils | Coil | Coil | 1029 | 1049 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11130.1 | RNA-dependent RNA polymerase 2. Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004). | 0 |
| RefSeq | XP_010678731.2 | RNA-dependent RNA polymerase 2 [Beta vulgaris subsp. vulgaris] | 0 |
| O82504 | RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6YJT5 | RNA-dependent RNA polymerase OS=Davidia involucrata OX=16924 GN=Din_001320 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology