halophFGD

Basic Information

Locus ID: Lb4G24158

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Short Name: FDH1

Description: Catalyzes the NAD( )-dependent oxidation of formate to carbon dioxide. Involved in the cell stress response

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr04	110081074	110084028	+	Lb4G24158

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.92	43,384.30 Da	30.26	89.02	-0.16

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd05302	FDH	44	396	0.0	IPR033689
CDD	cd05302	FDH	44	396	0.0	IPR033689
Pfam	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	170	353	1.5E-49	IPR006140
Pfam	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	170	353	1.5E-49	IPR006140
Pfam	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	80	379	5.1E-16	IPR006139
Pfam	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	80	379	5.1E-16	IPR006139
SUPERFAMILY	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like	56	181	1.89E-46	-
SUPERFAMILY	SSF51735	NAD(P)-binding Rossmann-fold domains	163	354	1.3E-50	IPR036291
SUPERFAMILY	SSF51735	NAD(P)-binding Rossmann-fold domains	163	354	1.3E-50	IPR036291
SUPERFAMILY	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like	56	181	1.89E-46	-
Gene3D	G3DSA:3.40.50.720	-	160	355	7.7E-162	-
Gene3D	G3DSA:3.40.50.720	-	160	355	7.7E-162	-
Gene3D	G3DSA:3.40.50.720	-	45	393	7.7E-162	-
Gene3D	G3DSA:3.40.50.720	-	45	393	7.7E-162	-
ProSitePatterns	PS00065	D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.	208	235	-	IPR029752
ProSitePatterns	PS00671	D-isomer specific 2-hydroxyacid dehydrogenases signature 3.	287	303	-	IPR029753
ProSitePatterns	PS00670	D-isomer specific 2-hydroxyacid dehydrogenases signature 2.	258	280	-	IPR029753
ProSitePatterns	PS00670	D-isomer specific 2-hydroxyacid dehydrogenases signature 2.	258	280	-	IPR029753
ProSitePatterns	PS00671	D-isomer specific 2-hydroxyacid dehydrogenases signature 3.	287	303	-	IPR029753
ProSitePatterns	PS00065	D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.	208	235	-	IPR029752
Hamap	MF_03210	Formate dehydrogenase, mitochondrial.	44	397	58.71806	IPR033689
Hamap	MF_03210	Formate dehydrogenase, mitochondrial.	44	397	58.71806	IPR033689

Gene Ontology

Molecular Function:

GO:0008863 (formate dehydrogenase (NAD+) activity) GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor) GO:0051287 (NAD binding)

KEGG Pathway

KO Term:

K00122 (formate dehydrogenase [EC:1.17.1.9])

Pathway:

ko00630 (Glyoxylate and dicarboxylate metabolism) map00630 (Glyoxylate and dicarboxylate metabolism) ko00680 (Methane metabolism) map00680 (Methane metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism)

Reaction:

R00519 (Formate + NAD+ <=> H+ + CO2 + NADH)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G14780.1	formate dehydrogenase. Encodes a NAD-dependent formate dehydrogenase.
RefSeq	XP_052190895.1	formate dehydrogenase, mitochondrial [Diospyros lotus]
Swiss-Prot	Q07511	Formate dehydrogenase, mitochondrial OS=Solanum tuberosum OX=4113 GN=FDH1 PE=1 SV=2
TrEMBL	A0A5B7AQB4	Formate dehydrogenase, mitochondrial OS=Davidia involucrata OX=16924 GN=Din_027696 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg17799
Aizoaceae	Mesembryanthemum crystallinum	1	gene_12713
Amaranthaceae	Atriplex hortensis	1	Ah030137
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg19126, Sbi_jg37548
Amaranthaceae	Salicornia europaea	1	Seu_jg5389
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00012453
Amaranthaceae	Suaeda glauca	4	Sgl22025, Sgl22142, Sgl27286, Sgl27400
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000005312, gene:ENSEOMG00000034761 ... gene:ENSEOMG00000040269
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.7AG0016150, CQ.Regalona.r1.7BG0019470
Anacardiaceae	Pistacia vera	1	pistato.v30022270
Apiaceae	Apium graveolens	1	Ag9G00485
Arecaceae	Cocos nucifera	2	COCNU_05G009860, COCNU_13G000820
Arecaceae	Phoenix dactylifera	3	gene-LOC103701979, gene-LOC103705850, gene-LOC120113313
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.2782.V1.1, AsparagusV1_01.2783.V1.1
Asteraceae	Flaveria trinervia	1	Ftri6G01021
Brassicaceae	Arabidopsis thaliana	1	AT5G14780.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10012160m.g.v1.0, Thhalv10013803m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g30980.v2.2, Sp6g29260.v2.2
Brassicaceae	Brassica nigra	2	BniB02g048000.2N, BniB05g023760.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G1055, Ceq02G1816
Casuarinaceae	Casuarina glauca	2	Cgl02G1096, Cgl02G1895
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno09g07720
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g03390
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-10314, nbisL1-mrna-12307, nbisL1-mrna-6832 ... nbisL1-mrna-6834, nbisL1-mrna-6835
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG05.389
Plantaginaceae	Plantago ovata	1	Pov_00027872
Plumbaginaceae	Limonium bicolor	2	Lb4G23151, Lb4G24158
Poaceae	Echinochloa crus-galli	6	AH06.1462, AH07.3170, BH06.1477, BH07.3001, CH06.1614 ... CH07.3076
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0520330, gene-QOZ80_6BG0472440
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0676800.1
Poaceae	Lolium multiflorum	2	gene-QYE76_024678, gene-QYE76_029710
Poaceae	Oryza coarctata	4	Oco11G008800, Oco11G008810, Oco11G008890, Oco12G008840
Poaceae	Oryza sativa	2	LOC_Os06g29180.1, LOC_Os06g29220.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G249800, gene-BS78_10G149700
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0403923, Pt_Chr0403963
Poaceae	Sporobolus alterniflorus	2	Chr14G005670, Chr21G006380
Poaceae	Thinopyrum elongatum	4	Tel4E01G022100, Tel4E01G022200, Tel6E01G502900 ... Tel7E01G416900
Poaceae	Triticum dicoccoides	6	gene_TRIDC4BG010280, gene_TRIDC5BG059530 ... gene_TRIDC6AG042120, gene_TRIDC6BG049080, gene_TRIDC7AG029870, gene_TRIDC7BG020610
Poaceae	Triticum aestivum	9	TraesCS4B02G066400.1, TraesCS4D02G007200.1 ... TraesCS5D02G389600.1, TraesCS6A02G274900.1, TraesCS6B02G302400.2, TraesCS6D02G255200.2, TraesCS7A02G232200.1, TraesCS7B02G130600.1, TraesCS7D02G232300.1
Poaceae	Zea mays	6	Zm00001eb053990_P001, Zm00001eb109380_P001 ... Zm00001eb208450_P001, Zm00001eb222940_P002, Zm00001eb358390_P001, Zm00001eb382240_P001
Poaceae	Zoysia japonica	1	nbis-gene-43776
Poaceae	Zoysia macrostachya	1	Zma_g31862
Portulacaceae	Portulaca oleracea	2	evm.TU.LG01.1362, evm.TU.LG14.649
Posidoniaceae	Posidonia oceanica	1	gene.Posoc04g05210
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_6_RagTag.165, evm.TU.Scaffold_6_RagTag.168 ... evm.TU.Scaffold_6_RagTag.170
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-14982
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-647
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-137
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000011l.115
Rhizophoraceae	Kandelia obovata	1	Maker00006881
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-11859
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-17434
Salicaceae	Populus euphratica	1	populus_peu26953
Solanaceae	Lycium barbarum	1	gene-LOC132621519
Solanaceae	Solanum chilense	1	SOLCI003448200
Solanaceae	Solanum pennellii	1	gene-LOC107011544
Tamaricaceae	Reaumuria soongarica	2	STRG.23210_chr05_-, gene_13828
Tamaricaceae	Tamarix chinensis	1	TC01G2232
Zosteraceae	Zostera marina	1	Zosma06g07210.v3.1