halophFGD

Basic Information

Locus ID: Lb4G23999

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: transcriptional corepressor

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr04	103627779	103634360	-	Lb4G23999

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.49	80,126.76 Da	49.94	66.91	-0.48

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	462	738	5.24622E-58	-
CDD	cd00200	WD40	462	738	5.24622E-58	-
Pfam	PF00400	WD domain, G-beta repeat	498	531	1.8E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	498	531	1.8E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	461	489	9.0E-4	IPR001680
Pfam	PF04053	Coatomer WD associated region	562	679	3.5E-8	IPR006692
Pfam	PF08513	LisH	10	35	2.1E-6	IPR006594
Pfam	PF00400	WD domain, G-beta repeat	461	489	9.0E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	705	738	0.21	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	705	738	0.21	IPR001680
Pfam	PF08513	LisH	10	35	2.1E-6	IPR006594
Pfam	PF04053	Coatomer WD associated region	562	679	3.5E-8	IPR006692
SUPERFAMILY	SSF50978	WD40 repeat-like	456	738	1.55E-58	IPR036322
SUPERFAMILY	SSF50978	WD40 repeat-like	456	738	1.55E-58	IPR036322
Gene3D	G3DSA:2.130.10.10	-	434	585	1.7E-30	IPR015943
Gene3D	G3DSA:2.130.10.10	-	586	738	7.1E-25	IPR015943
Gene3D	G3DSA:2.130.10.10	-	434	585	1.7E-30	IPR015943
Gene3D	G3DSA:2.130.10.10	-	586	738	7.1E-25	IPR015943
SMART	SM00667	Lish	8	40	0.0016	IPR006594
SMART	SM00320	WD40_4	700	738	0.0014	IPR001680
SMART	SM00320	WD40_4	578	614	35.0	IPR001680
SMART	SM00320	WD40_4	617	655	9.8E-5	IPR001680
SMART	SM00320	WD40_4	535	575	0.039	IPR001680
SMART	SM00320	WD40_4	451	489	1.3E-4	IPR001680
SMART	SM00320	WD40_4	658	698	7.9	IPR001680
SMART	SM00320	WD40_4	451	489	1.3E-4	IPR001680
SMART	SM00320	WD40_4	492	531	6.3E-8	IPR001680
SMART	SM00320	WD40_4	535	575	0.039	IPR001680
SMART	SM00320	WD40_4	658	698	7.9	IPR001680
SMART	SM00320	WD40_4	617	655	9.8E-5	IPR001680
SMART	SM00667	Lish	8	40	0.0016	IPR006594
SMART	SM00320	WD40_4	578	614	35.0	IPR001680
SMART	SM00320	WD40_4	700	738	0.0014	IPR001680
SMART	SM00320	WD40_4	492	531	6.3E-8	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	499	531	14.151034	IPR001680
ProSiteProfiles	PS50896	LIS1 homology (LisH) motif profile.	8	40	9.40982	IPR006594
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	707	738	10.475033	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	707	738	10.475033	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	499	531	14.151034	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	464	498	9.873505	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	499	531	11.708317	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	707	738	10.126507	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	464	498	9.873505	IPR001680
ProSiteProfiles	PS50896	LIS1 homology (LisH) motif profile.	8	40	9.40982	IPR006594
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	707	738	10.126507	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	499	531	11.708317	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	476	490	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	476	490	-	IPR019775
MobiDBLite	mobidb-lite	consensus disorder prediction	283	367	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	283	367	-	-

Gene Ontology

Biological Process:

GO:0006886 (intracellular protein transport) GO:0016192 (vesicle-mediated transport)

Molecular Function:

GO:0005198 (structural molecule activity) GO:0005515 (protein binding)

Cellular Component:

GO:0030117 (membrane coat)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G32700.6	LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG.
RefSeq	XP_021763452.1	transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Chenopodium quinoa]
Swiss-Prot	O48847	Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1
TrEMBL	A0A5B7AJ74	LisH domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_025439 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg16251, jg20280, jg22059, jg8611
Aizoaceae	Mesembryanthemum crystallinum	2	gene_308, gene_6472
Amaranthaceae	Atriplex hortensis	1	Ah028258
Amaranthaceae	Beta vulgaris	2	BVRB_7g167480, BVRB_8g183000
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg26043, Sbi_jg26535, Sbi_jg34031, Sbi_jg56959 ... Sbi_jg9889
Amaranthaceae	Salicornia europaea	2	Seu_jg15064, Seu_jg18834
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00011930, GOSA_00017054
Amaranthaceae	Suaeda glauca	4	Sgl45950, Sgl50646, Sgl73822, Sgl77324
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000005931, gene:ENSEOMG00000037452 ... gene:ENSEOMG00000041460
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7AG0010420, CQ.Regalona.r1.7BG0012500 ... CQ.Regalona.r1.8AG0005430, CQ.Regalona.r1.8BG0005590
Anacardiaceae	Pistacia vera	2	pistato.v30014570, pistato.v30241180
Apiaceae	Apium graveolens	3	Ag10G00753, Ag2G01249, Ag2G02796
Arecaceae	Cocos nucifera	4	COCNU_07G000990, COCNU_08G011640, COCNU_09G009570 ... COCNU_10G000720
Arecaceae	Phoenix dactylifera	4	gene-LOC103703910, gene-LOC103706939, gene-LOC103711896 ... gene-LOC103716258
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.166.V1.1, AsparagusV1_07.1976.V1.1
Asteraceae	Flaveria trinervia	4	Ftri10G04211, Ftri12G14860, Ftri15G01661, Ftri4G09309
Brassicaceae	Arabidopsis thaliana	1	AT2G32700.7
Brassicaceae	Eutrema salsugineum	1	Thhalv10016303m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g15040.v2.2, SpUn0199_0030.v2.2
Brassicaceae	Brassica nigra	3	BniB01g011410.2N, BniB06g021800.2N, BniB08g020560.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G2005, Ceq07G0750
Casuarinaceae	Casuarina glauca	2	Cgl06G2114, Cgl07G0795
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno10g00390
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g06810
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-5394, nbisL1-mrna-6384, nbisL1-mrna-956 ... nbisL1-mrna-9750, nbisL1-mrna-9751
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.1547, evm.TU.LG11.588, evm.TU.LG11.589
Plantaginaceae	Plantago ovata	5	Pov_00012969, Pov_00015092, Pov_00024507, Pov_00024510 ... Pov_00031791
Plumbaginaceae	Limonium bicolor	1	Lb4G23999
Poaceae	Echinochloa crus-galli	6	AH01.649, AH07.3919, BH01.73, BH07.3726, CH07.3787 ... CH09.3263
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_1AG0009880, gene-QOZ80_1BG0058470 ... gene-QOZ80_2AG0150070, gene-QOZ80_2BG0205530, gene-QOZ80_3AG0207350
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0537790.1, HORVU.MOREX.r3.6HG0628510.1
Poaceae	Lolium multiflorum	2	gene-QYE76_026351, gene-QYE76_026670
Poaceae	Oryza coarctata	6	Oco03G025040, Oco04G025520, Oco05G029570, Oco06G030530 ... Oco07G010450, Oco08G010220
Poaceae	Oryza sativa	3	LOC_Os02g56880.1, LOC_Os03g64300.1, LOC_Os04g43130.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G001500, gene-BS78_03G081900 ... gene-BS78_04G316500
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0106930, Pt_Chr0106931, Pt_Chr0604270, Pt_Chr0604343
Poaceae	Sporobolus alterniflorus	8	Chr01G000040, Chr04G033050, Chr07G032170, Chr09G016760 ... Chr0G014110, Chr12G038290, Chr13G001010, Chr15G000990
Poaceae	Thinopyrum elongatum	1	Tel5E01G904500
Poaceae	Triticum dicoccoides	4	gene_TRIDC5BG083790, gene_TRIDC6AG057060 ... gene_TRIDC6BG066500, gene_TRIDC7BG000320
Poaceae	Triticum aestivum	8	TraesCS5B02G568500.2, TraesCS5D02G560700.2 ... TraesCS6A02G383400.1, TraesCS6B02G422600.1, TraesCS6B02G422700.1, TraesCS6D02G368200.1, TraesCS6D02G368300.1, TraesCS7B02G003100.1
Poaceae	Zea mays	2	Zm00001eb065280_P001, Zm00001eb258660_P001
Poaceae	Zoysia japonica	2	nbis-gene-13185, nbis-gene-8342
Poaceae	Zoysia macrostachya	3	Zma_g14684, Zma_g17395, Zma_g8
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.35, evm.TU.LG03.1014, evm.TU.LG04.712 ... evm.TU.LG12.716
Posidoniaceae	Posidonia oceanica	2	gene.Posoc06g01030, gene.Posoc06g19410
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_12_RagTag.838, evm.TU.Scaffold_12_RagTag.839 ... evm.TU.Scaffold_3_RagTag.1369, evm.TU.Scaffold_5_RagTag.1202, evm.TU.Scaffold_6_RagTag.974
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-11670, nbisL1-mrna-15693, nbisL1-mrna-1695
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-12871, nbisL1-mrna-18194, nbisL1-mrna-20549 ... nbisL1-mrna-3654, nbisL1-mrna-4048, nbisL1-mrna-9076
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-11247, nbisL1-mrna-18274, nbisL1-mrna-21576 ... nbisL1-mrna-2616
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000006l.697, evm.TU.utg000011l.616 ... evm.TU.utg000019l.416, evm.TU.utg000027l.132
Rhizophoraceae	Kandelia obovata	6	Maker00001630, Maker00006284, Maker00006302, Maker00006307 ... Maker00007482, Maker00013031
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-10624, nbisL1-mrna-12239, nbisL1-mrna-15147 ... nbisL1-mrna-9846
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-18131, nbisL1-mrna-19900, nbisL1-mrna-21933 ... nbisL1-mrna-4366
Salicaceae	Populus euphratica	4	populus_peu04067, populus_peu10049, populus_peu30918 ... populus_peu34901
Solanaceae	Lycium barbarum	7	gene-LOC132607240, gene-LOC132607261, gene-LOC132610110 ... gene-LOC132622306, gene-LOC132622484, gene-LOC132640583, gene-LOC132640650
Solanaceae	Solanum chilense	3	SOLCI001175500, SOLCI004650700, SOLCI005438600
Solanaceae	Solanum pennellii	4	gene-LOC107011710, gene-LOC107023312, gene-LOC107028047 ... gene-LOC107031289
Tamaricaceae	Reaumuria soongarica	1	gene_7164
Tamaricaceae	Tamarix chinensis	1	TC01G0621
Zosteraceae	Zostera marina	3	Zosma01g38480.v3.1, Zosma01g38490.v3.1, Zosma05g22500.v3.1