Basic Information
Locus ID:
Lb4G23944
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
G3BP-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 101609703 | 101613870 | + | Lb4G23944 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 49,334.56 Da | 35.33 | 57.18 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00780 | NTF2 | 19 | 139 | 2.80688E-40 | IPR018222 |
| CDD | cd00780 | NTF2 | 19 | 139 | 2.80688E-40 | IPR018222 |
| CDD | cd00590 | RRM_SF | 276 | 345 | 4.57914E-12 | - |
| CDD | cd00590 | RRM_SF | 276 | 345 | 4.57914E-12 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 276 | 332 | 5.2E-11 | IPR000504 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 23 | 137 | 2.7E-24 | IPR002075 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 23 | 137 | 2.7E-24 | IPR002075 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 276 | 332 | 5.2E-11 | IPR000504 |
| SUPERFAMILY | SSF54427 | NTF2-like | 19 | 138 | 4.09E-34 | IPR032710 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 267 | 348 | 4.16E-17 | IPR035979 |
| SUPERFAMILY | SSF54427 | NTF2-like | 19 | 138 | 4.09E-34 | IPR032710 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 267 | 348 | 4.16E-17 | IPR035979 |
| Gene3D | G3DSA:3.10.450.50 | - | 11 | 144 | 3.3E-35 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 257 | 354 | 7.4E-15 | IPR012677 |
| Gene3D | G3DSA:3.10.450.50 | - | 11 | 144 | 3.3E-35 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 257 | 354 | 7.4E-15 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 275 | 345 | 2.0E-11 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 275 | 345 | 2.0E-11 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 274 | 349 | 12.492113 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 274 | 349 | 12.492113 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 23 | 137 | 28.697062 | IPR018222 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 23 | 137 | 28.697062 | IPR018222 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 464 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25150.1 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 0 |
| RefSeq | XP_010274054.1 | PREDICTED: ras GTPase-activating protein-binding protein 1-like [Nelumbo nucifera] | 0 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8BBX8 | ras GTPase-activating protein-binding protein 1-like OS=Nelumbo nucifera OX=4432 GN=LOC104609434 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology